Organic Chemistry 202-SNU-RE • CEGEP, Montreal

Corrected exercises: nomenclature and isomerism in organic chemistry (202-SNU-RE)

This is the first corrected exercise set in organic chemistry, devoted to structure: naming, drawing and telling molecules apart. It is written for Organic Chemistry 202-SNU-RE, an elective course of the CEGEP Natural Science program that follows General Chemistry 202-SN1-RE. Part A builds the nomenclature: branched alkanes with the big trap of the wrongly chosen parent chain (exercise 1), rings and aromatic compounds (exercise 2), functional groups and their priorities, which decide the suffix and the prefixes (exercises 3 and 4), then the degree of unsaturation, the counting tool that says how many rings and double bonds hide in a molecular formula (exercise 5). Part B draws up the map of isomerism: chain, position and functional isomers, Z/E stereoisomerism on the double bond (exercise 6), chirality and R/S descriptors by the Cahn-Ingold-Prelog priority rules, up to tartaric acid and its meso compound (exercise 7), wedge-and-dash, Newman and Fischer representations (exercise 8), optical rotation, Biot's law, the racemic mixture and its resolution (exercise 9), and finally the conformations of butane, read on the real torsional energy curve (exercise 10).

The whole chapter is a matter of rigour: organic chemistry is a prerequisite for university programs in health and science, and one badly numbered chain, one forgotten alphabetical order or one missed stereocentre makes the name wrong.

Part C goes back over five classics: naming alkenes and alkynes (exercise 11), CIP priorities with the duplicated atoms of multiple bonds (exercise 12), Z or E when cis and trans are no longer enough (exercise 13), the eight alcohols of formula C5H12OC_{5}H_{12}O (exercise 14) and menthol, three stereocentres on a chair (exercise 15).

The reflex to keep throughout: before naming, look for the longest chain EVERYWHERE, including through branches drawn upward or downward; before counting stereoisomers, look for elements of symmetry. The molecule as drawn is under no obligation to be laid out flat in the right direction: that is precisely what exams play on.

15 corrected exercises • 150 points • 225 minutes

This chapter is part of 202-SNU-RE, every chapter with its set and sheet Before you start Revision sheet: the traps and the method for this chapter

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Course recap

  • • Naming alkanes: 1) find the LONGEST chain (in every direction of the drawing); 2) number to give the lowest locants to the substituents (at the first point of difference); 3) name the substituents with the suffix -yl, in ALPHABETICAL order (the prefixes di- and tri- do not count in the ordering); 4) assemble: locants-substituents + chain name.
  • • Functional groups and priorities (from highest to lowest): carboxylic acid > ester > amide > aldehyde > ketone > alcohol > amine > alkene > alkane. The priority group gives the SUFFIX (-oic acid, -al, -one, -ol...) and fixes carbon 1; the others become prefixes (hydroxy-, oxo-, amino-...).
  • • Degree of unsaturation of a formula CcHhNnOoXxC_{c}H_{h}N_{n}O_{o}X_{x}: DU=2c+2+n−h−x2DU=\frac{2c+2+n-h-x}{2} (oxygen does not count). Each ring and each π\pi bond is worth 1; a DU of 4 or more should make you think of a benzene ring.
  • • Constitutional isomers (same molecular formula, different connectivity): CHAIN (different skeletons), POSITION (same functional group, different carbon), FUNCTIONAL (different functional groups). Stereoisomers: same connectivity, different spatial arrangement.
  • • Z/E: possible only if EACH carbon of the double bond carries two different groups. CIP priorities (decreasing atomic number, ties broken at the following atoms): priority groups on the same side = Z, opposite = E. R/S: rank the 4 groups of an asymmetric carbon, look with group 4 pointing to the back: 1→2→3 clockwise = R, counterclockwise = S.
  • • nn stereogenic centres give AT MOST 2n2^{n} stereoisomers: a meso compound (an achiral molecule despite its centres, thanks to internal symmetry) removes some. Enantiomers: non-superimposable mirror images, same physical properties except optical rotation; diastereomers (including Z/E pairs): all properties different. Conformers: interconverted by simple ROTATION about single bonds, not isolable at room temperature.

Part A: Nomenclature (/50)

Exercise 1: Naming an alkane: the method and the trap

The molecule in the figure is drawn as a skeletal (line-angle) formula: every vertex is a carbon and the hydrogens are implied.

  • a) Recall the four steps of the naming method, then name the molecule in the figure and give its molecular formula.
  • b) A student names a molecule “2-ethyl-3-methylpentane”. Draw it, show that this name breaks a rule, and give the correct name.
  • c) Draw all the chain isomers of formula C6H14C_{6}H_{14} and name them. How many are there?
  • d) Iso-octane, the reference of the octane rating of fuels, is 2,2,4-trimethylpentane. Give its molecular formula and explain why its name is not “2,4,4-trimethylpentane”.

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  • a) 4-ethyl-2,3-dimethylhexane, C10H22C_{10}H_{22}
  • b) Wrong parent chain: 3,4-dimethylhexane
  • c) 5 isomers
  • d) C8H18C_{8}H_{18}; {2,2,4} wins at the first point of difference
a)

Method: 1) find the LONGEST chain; 2) number from the end that gives the lowest locants; 3) list the substituents in ALPHABETICAL order; 4) assemble. Here the longest chain has 6 carbons (hexane), with two methyl groups and one ethyl group. Numbering from the left: methyls at 2 and 3, ethyl at 4, that is the locants {2, 3, 4}; from the right we would get {3, 4, 5}, which is worse. Alphabetical order: ethyl before methyl (the prefixes di- and tri- do not count). Name: 4-ethyl-2,3-dimethylhexane. Molecular formula: 10 carbons, acyclic alkane, so C10H22C_{10}H_{22} (CnH2n+2C_{n}H_{2n+2}).

b)

“2-Ethyl-3-methylpentane”: a chain of 5 carbons with an ethyl group on C2 and a methyl group on C3. But going THROUGH the ethyl group gives a chain of 6 carbons: the longest-chain rule is broken, and pentane was not the true parent chain. Renumbering on the hexane, the two methyl groups fall on 3 and 4: the correct name is 3,4-dimethylhexane (same formula C8H18C_{8}H_{18}). This is THE classic trap: a substituent drawn as a “branch” can be part of the parent chain.

c)

There are FIVE: hexane (straight chain), 2-methylpentane, 3-methylpentane, 2,2-dimethylbutane and 2,3-dimethylbutane. Beware of false duplicates: “4-methylpentane” does not exist (it is 2-methylpentane numbered backwards) and neither does “3,3-dimethylbutane” (it is 2,2- read from the other end). Five skeletons, five different boiling points: the more branched the isomer, the lower it boils.

d)

8 carbons, an alkane: C8H18C_{8}H_{18}, the heavily branched isomer of octane. The two possible numberings give the locants {2, 2, 4} or {2, 4, 4}: we compare at the FIRST point of difference: 2 = 2, then 2 < 4, so the set {2, 2, 4} wins. The rule is not “the lowest sum” but “the lowest locant at the first point of difference”, and it is the one that decides here.

3,4-dimethylhexane(six-carbon chain: green)hexane2-methylpentane3-methylpentane2,2-dimethylbutane2,3-dimethylbutaneb)c)

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Exercise 2: Naming a ring and an aromatic compound

A ring is named like a chain, with the prefix “cyclo”, but it brings two new rules: the numbering no longer starts at an end, since there is none, and the ring may become the parent structure or be only a substituent. The figure below shows these five compounds.

a1a2BrCla3b1b2
  • a) Name the following compounds: a cyclohexane bearing a methyl group on C1 and an ethyl group on C3; a cyclopentane bearing two methyl groups on the same carbon; a cyclobutane bearing a bromine and a chlorine on two neighbouring carbons. State the numbering rule you applied.
  • b) We have a cyclohexane bearing a three-carbon chain, and a heptane bearing a cyclopropane. Name both, and state the rule that decides which of the ring or the chain becomes the parent structure.
  • c) The group C6H5−C_{6}H_{5}- is called phenyl and the group C6H5CH2−C_{6}H_{5}CH_{2}- benzyl. Name the compound C6H5CH2ClC_{6}H_{5}CH_{2}Cl in two ways, one by substitution on the ring, the other by treating the ring as a substituent. Then name C6H5OHC_{6}H_{5}OH, C6H5CH3C_{6}H_{5}CH_{3} and C6H5NH2C_{6}H_{5}NH_{2}, whose names are retained by usage.
  • d) On a disubstituted benzene we use the prefixes ortho, meta and para. Give the numerical positions corresponding to each, then name 1,4-dimethylbenzene and 1,2-dichlorobenzene in two ways. How many positional isomers exist for a benzene DIsubstituted by two identical groups, and for a benzene TRIsubstituted by three identical groups?

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  • a) 1-ethyl-3-methylcyclohexane; 1,1-dimethylcyclopentane; 1-bromo-2-chlorocyclobutane
  • b) Propylcyclohexane; cyclopropylheptane
  • c) Benzyl chloride or (chloromethyl)benzene; phenol, toluene, aniline
  • d) Ortho 1,2, meta 1,3, para 1,4; 3 and 3 isomers
a)

The first is 1-ethyl-3-methylcyclohexane, the second 1,1-dimethylcyclopentane, the third 1-bromo-2-chlorocyclobutane. The numbering rule is this: start at a carbon that bears a substituent, give it locant 1, and go around in the direction that gives the substituents the lowest set of locants. In case of a tie, alphabetical order decides, and the substituent that comes first alphabetically gets the lowest locant: that is why the first compound is named 1-ethyl-3-methyl and not 1-methyl-3-ethyl, ethyl coming before methyl in the alphabet. The third illustrates the same rule, bromo coming before chloro.

b)

The first is propylcyclohexane and the second cyclopropylheptane. The rule is that of the larger number of carbons: the parent structure is the one that has more, the other becoming a substituent. Cyclohexane has six carbons against three for the chain, so it is the parent; heptane has seven against three for the ring, so heptane becomes the parent and the ring is only a cyclopropyl substituent. In a strict tie, current nomenclature gives priority to the ring. Remember that a ring is nothing special: it competes with the chain exactly as a longer side chain would.

c)

The compound C6H5CH2ClC_{6}H_{5}CH_{2}Cl is called benzyl chloride if the ring and its CH2CH_{2} are treated as a block, or (chloromethyl)benzene if benzene is taken as the parent structure. Both are correct, and the first is common usage. Next: C6H5OHC_{6}H_{5}OH is phenol, C6H5CH3C_{6}H_{5}CH_{3} toluene and C6H5NH2C_{6}H_{5}NH_{2} aniline. These three are retained names that official nomenclature keeps, and you must know them because they serve as parent names themselves: we speak of cresol, nitrotoluene or chloroaniline without ever going back to benzene.

d)

Ortho corresponds to positions 1,2; meta to positions 1,3; para to positions 1,4. So 1,4-dimethylbenzene is also called para-xylene, and 1,2-dichlorobenzene is called ortho-dichlorobenzene. For a benzene disubstituted by two IDENTICAL groups there are exactly three positional isomers, ortho, meta and para, because positions 1,5 and 1,6 reduce by rotation to positions 1,3 and 1,2. For a benzene trisubstituted by three identical groups there are also three: 1,2,3, 1,2,4 and 1,3,5. Counting is a classic exercise where the mistake is to count as distinct arrangements that superimpose by a simple rotation of the ring.

Exercise 3: Functional groups and their priorities

The figure shows an important biological molecule, produced by the liver during fasting, drawn as a skeleton with its groups condensed.

OHCOOH
  • a) Identify the two functional groups of the molecule in the figure, say which has priority, then name the molecule.
  • b) Name the following three molecules and give their class: CH3CH(OH)CH2CH3CH_{3}CH(OH)CH_{2}CH_{3}, CH3COCH2CH3CH_{3}COCH_{2}CH_{3}, CH3CH2CH2CHOCH_{3}CH_{2}CH_{2}CHO. Which one is obtained by oxidation of which?
  • c) Three molecules share the formula C3H6O2C_{3}H_{6}O_{2}: propanoic acid and two esters. Name and draw the two esters, then calculate the common degree of unsaturation and say what it corresponds to.
  • d) Build the name of the molecule HOCH2CH=CHCOOHHOCH_{2}CH=CHCOOH (E isomer), justifying the choice of suffix, prefix and infix.

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  • a) Acid has priority: 3-hydroxybutanoic acid
  • b) Butan-2-ol (secondary), butan-2-one, butanal; butan-2-ol → butan-2-one
  • c) Ethyl methanoate, methyl ethanoate; DU=1DU=1 (the C=OC=O)
  • d) (E)-4-hydroxybut-2-enoic acid
a)

A hydroxyl group −OH-OH (alcohol) and a carboxyl group −COOH-COOH (carboxylic acid). The acid has PRIORITY: it imposes the suffix (-oic acid) and its carbon is necessarily C1; the alcohol is demoted to the rank of prefix “hydroxy”. Chain of 4 carbons, OH on C3: 3-hydroxybutanoic acid (the “ketone body” β-hydroxybutyrate of biologists).

b)

CH3CH(OH)CH2CH3CH_{3}CH(OH)CH_{2}CH_{3}: butan-2-ol, a SECONDARY alcohol (the carbon bearing the OH is bonded to two carbons). CH3COCH2CH3CH_{3}COCH_{2}CH_{3}: butan-2-one, a ketone. CH3CH2CH2CHOCH_{3}CH_{2}CH_{2}CHO: butanal, an aldehyde (a group that is necessarily at the end of the chain, so no locant is needed). Oxidation: butan-2-ol (a secondary alcohol) is oxidized to butan-2-one; butanal comes from the mild oxidation of butan-1-ol, and is itself oxidized to butanoic acid. A tertiary alcohol, with no H on its carbon, is not oxidized.

c)

The two esters: ethyl methanoate HCOOCH2CH3HCOOCH_{2}CH_{3} (smell of rum) and methyl ethanoate CH3COOCH3CH_{3}COOCH_{3} (smell of glue). Degree of unsaturation: DU=2(3)+2−62=1DU=\frac{2(3)+2-6}{2}=1: it is the C=OC=O double bond, present in all three isomers. Three molecules, three different functional groups or connectivities, a single DUDU: the degree of unsaturation counts the unsaturations but does not say where they are.

d)

Chain of 4 carbons. Groups present: carboxylic acid (priority: suffix -oic acid, C1), alcohol (prefix hydroxy-, on C4), double bond (infix -en-, between C2 and C3). Configuration: on C2, COOHCOOH has priority over H; on C3, CH2OHCH_{2}OH has priority over H; the two priority groups are on opposite sides: E. Assembly: (E)-4-hydroxybut-2-enoic acid. The name reads like a sentence: every piece has its place imposed by the priorities.

CH₃CH₂COHOpropanoic acidHCOCH₂CH₃Oethyl methanoateCH₃COCH₃Omethyl ethanoatesame C₃H₆O₂, a single C=O bond: DU = 1

Exercise 4: Nitrogen functional groups and acid derivatives

Beyond alcohols, aldehydes, ketones and acids, two more families complete the table of functional groups in the course: nitrogen compounds, amines, amides and nitriles, and acid derivatives, esters, anhydrides and acyl chlorides. They are all named by the same principles, provided you know their rank of priority.

Decreasing order of priority of the groups, for the choice of suffix: carboxylic acid, ester, amide, nitrile, aldehyde, ketone, alcohol, amine. The figure below shows the four amines of question a).

CH₃CH₂NH₂1CH₃NHCH₃2CH₃CH₂NCH₂CH₃CH₂CH₃3CH₃CNH₂CH₃CH₃4
  • a) An amine is classed as primary, secondary or tertiary according to the number of carbon groups carried by the NITROGEN, not by the carbon that carries it. Classify and name: CH3CH2NH2CH_{3}CH_{2}NH_{2}, (CH3)2NH(CH_{3})_{2}NH, (CH3CH2)3N(CH_{3}CH_{2})_{3}N, and (CH3)3C−NH2(CH_{3})_{3}C-NH_{2}. Is this last case a trap?
  • b) Name and give the class of: CH3CH2CONH2CH_{3}CH_{2}CONH_{2}, CH3CH2C≡NCH_{3}CH_{2}C\equiv N, CH3COOCH2CH3CH_{3}COOCH_{2}CH_{3} and CH3CH2OCH3CH_{3}CH_{2}OCH_{3}. For the nitrile, specify where the carbon that counts in the name of the chain is found.
  • c) A molecule bears a hydroxyl group, a ketone and a carboxylic acid at the same time. Which one gives the suffix? In what form do the other two appear? Apply this to HOCH2−CO−CH2−COOHHOCH_{2}-CO-CH_{2}-COOH and give the full name.
  • d) The molecule H2N−CH2−COOHH_{2}N-CH_{2}-COOH is the simplest amino acid. Name it by systematic nomenclature, then explain why it is actually present in solution in a form carrying two charges. What do you predict for its solubility in water and its melting point, compared with an acid of similar size?

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  • a) Primary, secondary, tertiary; (CH3)3C−NH2(CH_{3})_{3}C-NH_{2} is primary
  • b) Propanamide, propanenitrile, ethyl ethanoate, methoxyethane
  • c) 4-hydroxy-3-oxobutanoic acid
  • d) 2-aminoethanoic acid, zwitterion: very soluble, high melting point
a)

CH3CH2NH2CH_{3}CH_{2}NH_{2} is ethanamine, a primary amine, the nitrogen carrying only one carbon group. (CH3)2NH(CH_{3})_{2}NH is N-methylmethanamine, or dimethylamine, a secondary amine. (CH3CH2)3N(CH_{3}CH_{2})_{3}N is N,N-diethylethanamine, or triethylamine, a tertiary amine. (CH3)3C−NH2(CH_{3})_{3}C-NH_{2} is 2-methylpropan-2-amine: it is indeed a PRIMARY amine, because its nitrogen carries only one carbon group, even though that carbon is itself tertiary. This is the classic trap of the chapter: for alcohols and alkyl halides, the class is read on the FUNCTIONAL CARBON, but for amines it is read on the NITROGEN. Confusing the two conventions leads to errors about reactivity, since a primary amine and a tertiary alcohol have nothing in common.

b)

CH3CH2CONH2CH_{3}CH_{2}CONH_{2} is propanamide, an amide. CH3CH2C≡NCH_{3}CH_{2}C\equiv N is propanenitrile, a nitrile; the carbon of the nitrile group counts in the parent chain and has locant 1, which explains why CH3CH2C≡NCH_{3}CH_{2}C\equiv N, with three carbons in all, the nitrile one included, is named on the root “propane” and not “ethane”. This is the most common mistake on this functional group. CH3COOCH2CH3CH_{3}COOCH_{2}CH_{3} is ethyl ethanoate, an ester, whose name is built in two words, the acid giving the first part and the alcohol the second. CH3CH2OCH3CH_{3}CH_{2}OCH_{3} is methoxyethane, an ether; since an ether has no suffix of its own, it always appears as an alkoxy prefix.

c)

The carboxylic acid has the highest priority of the three: it gives the suffix, so the molecule is named as an “...oic acid” and its carbon has locant 1. The ketone, of lower priority, appears as the prefix “oxo”, and the alcohol as the prefix “hydroxy”. For HOCH2−CO−CH2−COOHHOCH_{2}-CO-CH_{2}-COOH, the chain has four carbons; numbering from the acid carbon, the ketone is on 3 and the alcohol on 4. The name is therefore 4-hydroxy-3-oxobutanoic acid, the prefixes being listed in alphabetical order. The method is always the same: identify the priority group, make it the suffix, number from it, and relegate everything else to prefixes.

d)

Systematic nomenclature gives 2-aminoethanoic acid, the common name being glycine. This compound carries both an acid group and a basic group, and the carboxylic acid is quite strong enough to protonate the amine: the molecule reacts with itself and exists in solution as a ZWITTERION, H3N+−CH2−COO−H_{3}N^{+}-CH_{2}-COO^{-}, electrically neutral overall but carrying two opposite charges. The consequences are considerable. A species carrying two charges is strongly solvated by water: glycine is very soluble in it, much more than an acid of similar size such as propanoic acid. Above all, in the solid state, the zwitterions attract each other through genuine electrostatic forces and not through mere hydrogen bonds: the crystal behaves almost like an ionic solid. Glycine thus melts around 233 °C with decomposition, whereas propanoic acid, of comparable molar mass, melts at −21-21 °C. A gap of more than 250 degrees between two molecules of similar size is entirely explained by an internal acid-base reaction.

Exercise 5: The degree of unsaturation: count before you draw

The degree of unsaturation DU=2c+2+n−h−x2DU=\frac{2c+2+n-h-x}{2} (for CcHhNnOoXxC_{c}H_{h}N_{n}O_{o}X_{x}, oxygen not counting) gives the total number of rings and π\pi bonds in a molecule, before anything has even been drawn.

  • a) Justify the formula: why does each ring or π\pi bond remove exactly two hydrogens compared with the acyclic alkane CnH2n+2C_{n}H_{2n+2}? Why does oxygen not count?
  • b) Calculate the DUDU of C4H6C_{4}H_{6} and propose three isomers of clearly different structures that illustrate it.
  • c) A molecule of formula C7H8OC_{7}H_{8}O is aromatic. Calculate its DUDU, show that it fits a benzene ring, and propose two possible functional isomers.
  • d) Limonene (the smell of citrus fruit) has the formula C10H16C_{10}H_{16} and contains exactly two C=CC=C double bonds. How many rings does it have? Then check the DUDU of caffeine, C8H10N4O2C_{8}H_{10}N_{4}O_{2}, knowing that it has 2 rings, 2 C=OC=O bonds and 2 C=NC=N bonds.

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  • a) 2 H per unsaturation; oxygen is inserted without changing the count
  • b) DU=2DU=2
  • c) DU=4DU=4: a benzene ring
  • d) 1 ring; caffeine DU=6DU=6
a)

Closing a ring means creating a C-C bond between two carbons that each carried an H: two hydrogens disappear. Creating a π\pi bond (going from C-C to C=C) also removes one H from each carbon. Each “unsaturation” therefore costs exactly 2 H relative to the maximum 2c+22c+2, hence the division by 2. Oxygen, being divalent, is INSERTED into an existing bond (C-O-H or C-O-C) without changing the hydrogen count: it is invisible to the formula. Nitrogen, being trivalent, brings one more place instead, hence the +n+n.

b)

DU=2(4)+2−62=2DU=\frac{2(4)+2-6}{2}=2. Three very different readings of the same number: buta-1,3-diene (two π\pi bonds), but-1-yne (one triple bond, worth two π\pi bonds), and cyclobutene (one ring + one π\pi bond). Same molecular formula, unrelated chemistries: the DUDU constrains the structure, it does not give it.

c)

DU=2(7)+2−82=4DU=\frac{2(7)+2-8}{2}=4: exactly the signature of a benzene ring (1 ring + 3 π\pi bonds), which uses up all four unsaturations: the rest of the molecule is saturated and acyclic. Possible functional isomers: benzyl alcohol C6H5CH2OHC_{6}H_{5}CH_{2}OH, the cresols CH3C6H4OHCH_{3}C_{6}H_{4}OH (phenols), or anisole C6H5OCH3C_{6}H_{5}OCH_{3} (an ether): an alcohol, a phenol and an ether on the same molecular formula.

d)

Limonene: DU=2(10)+2−162=3DU=\frac{2(10)+2-16}{2}=3; two unsaturations are the double bonds given, leaving 3−2=13-2=1 RING (the six-membered ring of limonene). Caffeine: DU=2(8)+2+4−102=122=6DU=\frac{2(8)+2+4-10}{2}=\frac{12}{2}=6, and the inventory indeed gives 22 rings +2+2 (C=OC=O) +2+2 (C=NC=N) =6=6. The formula, apart from exotic atoms (+n+n for nitrogen), holds for any molecule of biochemistry.

buta-1,3-dienebut-1-ynecyclobuteneOHbenzyl alcoholOH4-methylphenolOanisole (ether)b)c)

Part B: Isomerism and stereochemistry (/50)

Exercise 6: The map of isomers and the Z/E pair

The figure shows two stereoisomers of but-2-ene as skeletal formulas. Questions a) and b) first draw up the complete map of isomerism.

molecule 1molecule 2
  • a) Classify each pair: butan-1-ol / butan-2-ol; butan-1-ol / ethoxyethane (CH3CH2OCH2CH3CH_{3}CH_{2}OCH_{2}CH_{3}); butane / 2-methylpropane; propanal / propanone. State each type of isomerism.
  • b) List ALL the isomers of formula C4H8C_{4}H_{8} (alkenes and rings), naming them. How many are constitutional isomers of one another, and where is the pair of stereoisomers hiding?
  • c) Identify molecules 1 and 2 in the figure (using the descriptors Z or E) and explain why but-1-ene and 2-methylpropene, for their part, have no Z/E pair.
  • d) Why are molecules 1 and 2 distinct, isolable compounds, whereas the conformations of a single bond are not? Base your answer on the energy needed to go from one to the other, and name a physical property that distinguishes them.

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  • a) Position, functional, chain, functional
  • b) 6 molecules, 5 constitutions
  • c) 1: (Z); 2: (E)
  • d) The π bond must be broken; (Z) boils higher
a)

Butan-1-ol / butan-2-ol: POSITION isomers (same alcohol group, same skeleton, different carbon). Butan-1-ol / ethoxyethane: FUNCTIONAL isomers (same C4H10OC_{4}H_{10}O, alcohol against ether). Butane / 2-methylpropane: CHAIN isomers (straight skeleton against branched). Propanal / propanone: FUNCTIONAL isomers (aldehyde against ketone, same C3H6OC_{3}H_{6}O). The first three types make up constitutional isomerism: the connectivity of the atoms differs.

b)

DU=1DU=1: one double bond OR one ring. Alkenes: but-1-ene, (Z)-but-2-ene, (E)-but-2-ene, 2-methylprop-1-ene. Rings: cyclobutane and methylcyclopropane. Six molecules in all: five different CONSTITUTIONS (but-1-ene, but-2-ene, 2-methylpropene, cyclobutane, methylcyclopropane), and within but-2-ene, the (Z)/(E) pair: same connectivity, different spatial arrangement, these being the only two stereoisomers in the list.

c)

On each carbon of the double bond of but-2-ene, we must compare the two groups carried: here CH3CH_{3} against H, and CH3CH_{3} has priority (C > H). Molecule 1: the two methyl groups on the SAME side of the plane of the double bond: (Z)-but-2-ene. Molecule 2: methyl groups on opposite sides: (E)-but-2-ene. But-1-ene has two identical H on its terminal carbon, and 2-methylpropene has two identical CH3CH_{3} on the same carbon: as soon as a carbon of the double bond carries two identical groups, swapping sides changes nothing, so there is no Z/E.

d)

Going from Z to E requires rotating about the C=CC=C bond, and therefore BREAKING the π\pi bond: about 260 kJ/mol, out of reach at room temperature. The two molecules can therefore be separated and stored in different bottles: they are DIASTEREOMERS, with different properties: (Z), whose two methyl groups on the same side create a small dipole moment, boils at about 4 °C, while (E), more symmetrical, boils at about 1 °C, and their melting points differ even more. About a SINGLE bond, rotation breaks nothing: a barrier of a few kJ/mol, crossed billions of times per second: the conformers interconvert constantly and will never be two distinct products.

but-1-ene(Z)-but-2-ene(E)-but-2-ene2-methylpropenecyclobutanemethylcyclopropane

Exercise 7: Chirality: R, S and the meso compound

A molecule is chiral if it cannot be superimposed on its mirror image. The R or S descriptor of an asymmetric carbon is determined with the CIP priorities: we rank the four groups, look with group 4 pointing to the back, and the direction 1→2→3 decides.

The figure gives butan-2-ol as a skeletal formula, then bromochlorofluoromethane as a wedge-and-dash (Cram) representation, its hydrogen carried by the hashed bond, and therefore pointing to the back.

OHbutan-2-olCBrFClHCHFClBr
  • a) Show that butan-2-ol has an asymmetric carbon and rank its four groups in decreasing CIP priority, justifying how ethyl is ranked against methyl.
  • b) Rank the four groups of bromochlorofluoromethane CHFClBr, then explain the complete procedure for assigning R or S to a three-dimensional drawing, including the trick when group 4 points toward you.
  • c) Tartaric acid HOOC−CHOH−CHOH−COOHHOOC-CHOH-CHOH-COOH has two asymmetric carbons. How many stereoisomers does the 2n2^{n} rule predict, how many actually exist, and why? Name the relationships between them.
  • d) Do two enantiomers have the same properties? Answer precisely, using the example of limonene (the two enantiomers smell of orange and of lemon) and the consequence for drugs.

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  • a) OH>C2H5>CH3>HOH>C_{2}H_{5}>CH_{3}>H
  • b) Br>Cl>F>HBr>Cl>F>H; group 4 pointing forward: reverse
  • c) 4 predicted, 3 real including the meso compound
  • d) Only the sign of the optical rotation differs
a)

Carbon 2 of butan-2-ol carries four groups, ALL different: OHOH, CH3CH_{3}, C2H5C_{2}H_{5} and H: it is an asymmetric carbon (stereocentre). Priorities: OHOH first (O, atomic number 8), then ethyl and methyl, two tied carbons, must be ranked: we look at their neighbours: ethyl carries (C, H, H), methyl (H, H, H); C > H at the first comparison, so ethyl wins. Ranking: OH>C2H5>CH3>HOH>C_{2}H_{5}>CH_{3}>H.

b)

A single carbon, four atoms directly comparable by atomic number: Br(35)>Cl(17)>F(9)>H(1)Br(35)>Cl(17)>F(9)>H(1). Procedure: orient the molecule with group 4 (here H) pointing to the BACK, then follow 1→2→3 (Br→Cl→F): clockwise = R, counterclockwise = S. If the drawing puts group 4 toward the front, there is no need to twist the molecule: read the apparent direction and REVERSE the answer. This molecule, the smallest example of an asymmetric carbon, does exist as two enantiomers.

c)

The rule predicts 22=42^{2}=4 combinations: (R,R), (S,S), (R,S) and (S,R). But the molecule is symmetrical (the two −CHOH−COOH-CHOH-COOH halves are identical): the (R,S) form is superimposable on the (S,R) form after flipping, it is ONE SINGLE molecule, achiral despite its two stereocentres: the MESO compound, which has an internal mirror plane. So only 3 stereoisomers exist: the pair of enantiomers (R,R)/(S,S), and the meso compound, a DIASTEREOMER of the first two (melting point 140 °C against 170 °C, no optical rotation).

d)

Two enantiomers share ALL scalar properties: same melting point, same solubility, same spectra: only one physical measurement distinguishes them, the direction in which they rotate the plane of polarized light (+α and −α). But in an environment that is ITSELF chiral they become different: our olfactory receptors are chiral proteins, and (R)-limonene smells of orange while (S) leans toward lemon and turpentine. The same logic, with much higher stakes, applies to drugs: biological targets being chiral, one enantiomer may heal while the other is inactive or harmful: modern pharmacopoeias require testing them, and often producing them, separately.

HOHOHHCOOHCOOHOHHHOHCOOHCOOHHOHHOHCOOHCOOH(2R,3R)(2S,3S)meso (2R,3S)mirrorplane ofsymmetry

Exercise 8: Wedge-and-dash, Newman and Fischer: three ways of drawing space

A molecule is a three-dimensional object that has to be represented on a flat sheet. Three conventions manage it, each suited to a different question: the wedge-and-dash (Cram) representation, with its solid and hashed wedges, to assign a configuration; the Newman projection, which looks along a bond, to discuss conformations; the Fischer projection, in the form of a cross, for molecules with several asymmetric carbons.

In a Fischer projection, the main chain is vertical, the most oxidized carbon at the top; the HORIZONTAL bonds point toward the viewer and the VERTICAL bonds point away from the viewer.

The figure gathers the three conventions: a butan-2-ol in wedge-and-dash representation, a butan-2-ol in Fischer projection, and butane viewed along the C2−C3C_{2}-C_{3} bond in Newman projection. Nothing says, a priori, that the two butan-2-ol drawings are the same molecule.

COHCH₃C₂H₅HCramCH₃HHHHCH₃NewmanCH₃C₂H₅OHHFischer
  • a) Explain why it is forbidden, in a Fischer projection, to rotate the cross by 90° in the plane of the sheet, whereas a rotation by 180° is allowed. What becomes of the configuration in each case?
  • b) State the method for assigning an RR or SS descriptor directly on a Fischer projection, taking into account that the priority 4 group is most often horizontal, and therefore directed toward the viewer. Justify the reversal rule used.
  • c) Swapping two groups on an asymmetric carbon reverses its configuration; two successive swaps restore it. Use this property to bring any projection to a form where group 4 is at the bottom, and explain how this simplifies the assignment.
  • d) Assign the descriptor RR or SS to the butan-2-ol drawn in wedge-and-dash representation, then to the one drawn in Fischer projection, by the method of b), and check the second result by the method of c). Do the two drawings show the same molecule or two enantiomers?

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  • a) 90° reverses, 180° keeps
  • b) Group 4 horizontal: reverse the direction read
  • c) Two swaps restore the configuration
  • d) Wedge-and-dash: RR; Fischer: RR; the same molecule, (R)(R)-butan-2-ol
a)

The Fischer convention is not symmetrical: the horizontal comes out of the sheet and the vertical goes into it. A rotation by 90° therefore swaps the two directions, and turns the bonds that pointed toward the viewer into bonds pointing away: the configuration represented is REVERSED, and without noticing you obtain the drawing of the enantiomer. A rotation by 180°, on the other hand, brings the horizontal back onto the horizontal and the vertical onto the vertical: both directions keep their meaning and the configuration is intact. This is trap number one of the Fischer projection, and it does not show on the drawing, which remains perfectly plausible.

b)

First rank the four groups by the Cahn, Ingold and Prelog rules, from the highest atomic number to the lowest. Then read the direction of rotation from 1 to 2 to 3, as it appears on the cross. If the priority 4 group is VERTICAL, it points to the back, which is the standard position: the direction read is the right one, clockwise gives RR and counterclockwise gives SS. If group 4 is HORIZONTAL, it points toward the viewer, that is, opposite to the standard position: we read the direction in the same way, then REVERSE the conclusion. The justification is simple: looking at a molecule from the side of the lowest-priority group, instead of from the opposite side, amounts to looking at it in a mirror as far as the direction of rotation is concerned, so the apparent direction is reversed.

c)

Swapping two groups on an asymmetric carbon produces its enantiomer, and therefore reverses the descriptor; two successive swaps, whichever they are, bring us back to the starting configuration. We can therefore, without changing the molecule, make two well-chosen swaps to bring the priority 4 group to the bottom position. Once this is done, we are always in the standard case, where the direction read translates directly into RR or SS with no reversal to remember. The benefit is that it removes the conditional rule of b), which is the most frequent source of errors on exams: it is better to make two swaps on scratch paper than to try to apply a mental reversal under time pressure.

d)

The priorities were established in exercise 77: OH>C2H5>CH3>HOH>C_{2}H_{5}>CH_{3}>H. Wedge-and-dash drawing: the hydrogen is carried by the hashed bond, so it points to the back, the standard position. We read the path OHOH at the top, ethyl at the bottom right, methyl at the bottom left: it is CLOCKWISE, with no reversal to make, so RR. Fischer projection: the hydrogen is on the horizontal, on the right, so directed TOWARD the viewer. We read OHOH on the left, ethyl at the bottom, methyl at the top: from the left we go down to the bottom, then back up on the right toward the top, which is COUNTERCLOCKWISE. Since group 4 points toward us, we reverse: RR. Check by two swaps. We swap the hydrogen and the ethyl: the hydrogen goes to the bottom, the ethyl to the right, and the configuration is reversed. We then swap the OHOH and the methyl: OHOH at the top, methyl on the left, and the configuration is restored. Group 4 is now vertical, toward the back; the path OHOH at the top, ethyl on the right, methyl on the left is clockwise, so RR with no reversal to remember: the two methods agree. Conclusion: the two drawings, which look nothing alike, show the SAME molecule, (R)(R)-butan-2-ol. That is the lesson of the question: we never compare two representations by eye, we compare their descriptors.

Exercise 9: Optical rotation, racemic mixtures and resolution

Chirality can be measured. A chiral substance in solution rotates the plane of polarization of plane-polarized light by an angle given by Biot's law: α=[α] l c\alpha=[\alpha]\,l\,c, where ll is the length of the cell in decimetres, cc the concentration in g/mL and [α][\alpha] the specific rotation of the substance.

Specific rotations: sucrose +66.5∘+66.5^{\circ}; (R)-carvone −62.5∘-62.5^{\circ}.

The figure shows the polarimeter schematically: plane-polarized light passes through a cell of length ll and comes out with its plane of polarization rotated by an angle α\alpha.

sourcesolutionlength lentry planeexit planeα
  • a) 10.0 g of sucrose are dissolved in water, made up to 100 mL, and the solution is observed in a 1.00 dm cell. Calculate the observed angle of rotation. What would it become in a 2.00 dm cell, then for a solution twice as dilute in the original cell?
  • b) A sample of carvone measured under the same conditions gives an apparent specific rotation of −50.0∘-50.0^{\circ}. Calculate its enantiomeric excess, then the percentages of the two enantiomers present.
  • c) Explain why an ordinary synthesis, starting from achiral reagents, can only give a racemic mixture, however carefully it is carried out. What is the optical rotation of such a mixture, and why does this zero not mean that no chiral molecule was formed?
  • d) To separate the two enantiomers of a racemic acid, it is reacted with a pure chiral base, the products are separated, and the acids are regenerated. Explain why this sequence works when no distillation or direct crystallization can do it. Finish by saying why the question matters beyond the laboratory.

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  • a) +6.65°+6.65°; +13.3°+13.3°; +3.33°+3.33°
  • b) ee=80 %ee=80\,\%: 90 % R, 10 % S
  • c) Zero optical rotation
  • d) Diastereomeric salts, separable
a)

The concentration is c=10.0100=0.100c=\dfrac{10.0}{100}=0.100 g/mL. Biot's law gives α=66.5×1.00×0.100=+6.65∘\alpha=66.5\times 1.00\times 0.100=+6.65^{\circ}. In a 2.00 dm cell, the light passes through twice as many molecules and the angle doubles: +13.3∘+13.3^{\circ}. With a solution twice as dilute in the original cell, the angle is halved: +3.33∘+3.33^{\circ}. The measured angle therefore depends entirely on the setup, whereas the specific rotation [α][\alpha] is a constant of the substance, which is precisely why it is defined that way. The solvent and the temperature at which it was measured must always be stated.

b)

The enantiomeric excess is the ratio of the observed rotation to that of the pure enantiomer: ee=50.062.5×100=80.0 %ee=\dfrac{50.0}{62.5}\times 100=80.0\,\%. Let xx be the percentage of the RR enantiomer, the major one since the sign is negative, and yy that of SS; we have x+y=100x+y=100 and x−y=80.0x-y=80.0, so x=90.0 %x=90.0\,\% and y=10.0 %y=10.0\,\%. The sample contains 90 % of (R)-carvone and 10 % of (S)-carvone. The reasoning is worth understanding rather than memorizing: the 10 % of SS cancel 10 % of RR, leaving 80 % of RR rotating alone, hence an optical rotation equal to 80 % of that of the pure enantiomer.

c)

If all the reagents, the solvent and the catalyst are achiral, the reaction medium has no way of telling left from right. Creating an asymmetric carbon means choosing between two faces of a plane or between two sides of an intermediate, and these two possibilities are strictly equivalent in energy in an achiral medium: the two transition states leading to them are mirror images of each other, hence of the same energy, hence taken at the same rate. The two enantiomers are thus formed in strictly equal amounts, and the optical rotation of the mixture is zero by exact cancellation. This zero is misleading: every individual molecule is indeed chiral and optically active, but for each one that deflects the light one way, another deflects it the other way. Obtaining a single enantiomer requires introducing chiral information into the system, in the form of a chiral catalyst, an enzyme or an auxiliary reagent.

d)

In an achiral environment, two enantiomers have exactly the same boiling points, the same solubilities and the same adsorption constants: no distillation, no crystallization, no ordinary chromatography can separate them. Reacting the mixture with a pure CHIRAL base changes everything: we obtain two salts that are no longer enantiomers but DIASTEREOMERS, since they differ in the configuration of only one centre, the other being identical. Now diastereomers have different physical properties: one crystallizes, the other stays in solution, and a simple filtration separates them. All that remains is to treat each salt with a strong acid to regenerate the starting acid, this time enantiomerically pure, and to recover the chiral base. The whole strategy rests on this idea: temporarily turning an undetectable difference into an exploitable one. The stakes go far beyond the laboratory, because living matter is itself chiral. Receptors and enzymes recognize only one enantiomer, which explains why the two forms of carvone smell one of caraway and the other of spearmint, and above all why two enantiomers of a drug can have different effects, the thalidomide tragedy having given in 1960 the most dramatic demonstration. Regulatory agencies now require the activity of each enantiomer to be documented separately.

Exercise 10: The conformations of butane: reading the energy curve

The figure shows the torsional energy of butane as a function of the dihedral angle between the two methyl groups (0° = methyl groups eclipsed). The dashed lines mark 3.8, 16 and 19 kJ/mol.

60120180240300360−2246810121416182022dihedral angle (°)E (kJ/mol)
  • a) Define what a conformation is, and locate on the curve the anti conformation, the two gauche conformations and the eclipsed conformations. Which is the most stable, and why?
  • b) Why does the maximum at 0° (19 kJ/mol) exceed those at 120° and 240° (16 kJ/mol)?
  • c) The gauche conformation costs 3.8 kJ/mol more than the anti. Using the Boltzmann factor e−ΔE/RTe^{-\Delta E/RT} at 25 °C and counting BOTH gauche conformations, calculate the fraction of molecules in the anti conformation.
  • d) Transpose this to cyclohexane: why is the chair form the favourite conformation, and what does a substituent such as methyl prefer? Estimate the equatorial proportion knowing that the axial position costs about 7.6 kJ/mol.

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  • a) Anti (180°) is the most stable
  • b) At 0°, the two methyl groups eclipse each other
  • c) About 70 % anti
  • d) Equatorial, about 96 %
a)

A conformation is a spatial arrangement obtained by simple ROTATION about single bonds, without breaking anything. Anti: methyl groups opposite, angle 180°, the absolute minimum of the curve (0 kJ/mol): the two big groups are as far apart as possible. Gauche: the two local minima at 60° and 300°, at 3.8 kJ/mol: staggered but with neighbouring methyl groups. Eclipsed: the three maxima (0°, 120°, 240°), where the bonds overlap. The molecule lives essentially at the bottom of the three wells and jumps from one to another constantly.

b)

At 120° and 240°, each methyl group eclipses a hydrogen: this is the “ordinary” eclipsing repulsion (16 kJ/mol). At 0°, the TWO METHYL GROUPS eclipse each other: on top of the torsional repulsions comes the direct steric crowding of the two biggest groups, hence the peak at 19 kJ/mol. The hierarchy of the maxima reads directly the size of the groups that pass each other.

c)

Boltzmann factor per gauche conformation: e−3800/(8.314×298)=e−1.53≈0.216e^{-3800/(8.314\times 298)}=e^{-1.53}\approx 0.216. With two gauche conformations for one anti: fanti=11+2(0.216)≈0.70f_{anti}=\frac{1}{1+2(0.216)}\approx 0.70. At room temperature, butane is anti about 70 % of the time and gauche 30 %: the energy curve translates directly into populations, and what we measure is indeed the average of all these forms.

d)

The chair of cyclohexane places all six C-C bonds in a perfectly staggered arrangement (no eclipsing, angles close to 109.5°): it is strain-free, unlike the boat form, which is eclipsed and crowded. A methyl group there has the choice between the AXIAL position (vertical, hindered by the two axial H on the same side of the ring) and the EQUATORIAL position (pointing outward, unhindered): the equatorial wins. Boltzmann ratio: e+7600/(8.314×298)≈21.5e^{+7600/(8.314\times 298)}\approx 21.5, that is 21.522.5≈96\frac{21.5}{22.5}\approx 96 % of the molecules with the methyl group equatorial. Golden rule of all the chemistry of sugars and steroids: big groups settle in the equatorial position.

Part C: the classics (/50)

Exercise 11: Naming alkenes and alkynes: the unsaturation comes first

For an alkene or an alkyne, the parent chain must contain the multiple bond, and the numbering gives the lowest locant to that bond first, before dealing with the substituents. The suffix becomes -ene or -yne, preceded by the locant of the first carbon of the multiple bond.

When a molecule carries a double AND a triple bond, the name ends in -en-...-yne; if the locants are tied, it is the double bond that receives the lowest one.

The figure gives the skeletal formulas of the three molecules of questions a), b) and c): every vertex and every end of a line bears a carbon.

a)b)c)
  • a) Name CH3CH2C(CH3)=CHCH3CH_{3}CH_{2}C(CH_{3})=CHCH_{3}, without a stereodescriptor.
  • b) Name HC≡C−CH2−CH=CH2HC\equiv C-CH_{2}-CH=CH_{2}, justifying the numbering.
  • c) Name CH3CH=CHCH(CH3)CH2CH3CH_{3}CH=CHCH(CH_{3})CH_{2}CH_{3}. Does this molecule have an asymmetric carbon? How many stereoisomers exist in all?
  • d) Write the condensed formula of 3,3-dimethylbut-1-yne and give its molecular formula and degree of unsaturation. Same question for cyclohexa-1,3-diene.
  • e) Three names are proposed: “pent-3-ene”, “2-methylbut-3-yne” and “3-methylbut-1-ene”. Correct the ones that are wrong.

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  • a) 3-methylpent-2-ene
  • b) Pent-1-en-4-yne
  • c) 4-methylhex-2-ene; C4 asymmetric; 4 stereoisomers
  • d) C6H10C_{6}H_{10}, DU=2DU=2; C6H8C_{6}H_{8}, DU=3DU=3
  • e) Pent-2-ene; 3-methylbut-1-yne; the third is correct
a)

The longest chain containing the double bond has five carbons. Numbering from the right, the double bond starts at C2 and the methyl group is on C3; from the left, the double bond would start at C3. We keep the first numbering: 3-methylpent-2-ene.

b)

The chain has five carbons. From the end with the double bond, the double bond is on 1 and the triple bond on 4; from the other end, the triple bond on 1 and the double bond on 4. The two sets of locants are equal, {1, 4}: the tie rule then gives the lowest locant to the double bond. The name is pent-1-en-4-yne. The trap is to write “pent-4-en-1-yne” in the belief that the triple bond, being more unsaturated, comes first.

c)

The parent chain contains the double bond and has six carbons: C1H3−C2H=C3H−C4H(CH3)−C5H2−C6H3C_{1}H_{3}-C_{2}H=C_{3}H-C_{4}H(CH_{3})-C_{5}H_{2}-C_{6}H_{3}. Name: 4-methylhex-2-ene. C4 carries four different groups, a hydrogen, a methyl group, an ethyl group and the propenyl group: it is an asymmetric carbon. The molecule therefore has two independent stereogenic elements, the double bond (ZZ or EE) and the asymmetric carbon (RR or SS): 2×2=42\times 2=4 stereoisomers, (2Z,4R), (2Z,4S), (2E,4R) and (2E,4S).

d)

3,3-Dimethylbut-1-yne: HC≡C−C(CH3)3HC\equiv C-C(CH_{3})_{3}, that is C6H10C_{6}H_{10} and DU=2(6)+2−102=2DU=\frac{2(6)+2-10}{2}=2, the two π\pi bonds of the triple bond. Cyclohexa-1,3-diene: a six-carbon ring bearing two conjugated double bonds, C6H8C_{6}H_{8}, and DU=2(6)+2−82=3DU=\frac{2(6)+2-8}{2}=3, one ring plus two π\pi bonds.

e)

“Pent-3-ene” is wrong: numbered from the other end, it is pent-2-ene. “2-Methylbut-3-yne” is wrong for the same reason: the triple bond must receive the lowest locant, before the methyl group, and the correct name is 3-methylbut-1-yne. “3-Methylbut-1-ene” is correct: the double bond is already on 1.

The thread: we choose a chain that contains the unsaturation, we number it for the unsaturation first, and the substituents only decide in case of a tie.

3,3-dimethylbut-1-yneC₆H₁₀, DU = 2cyclohexa-1,3-dieneC₆H₈, DU = 3

Exercise 12: CIP priorities: multiple bonds and a change of descriptor

To rank two groups whose first atom is the same, we compare the sets of atoms attached to it, ordered by decreasing atomic number. A double or triple bond is handled by DUPLICATING the atom at the end of the bond: −CH=O-CH=O counts as if the carbon carried (O, O, H), and −CH=CH2-CH=CH_{2} as if the first carbon carried (C, C, H).

We then study 4-methylpent-1-en-3-ol, CH2=CH−CH(OH)−CH(CH3)2CH_{2}=CH-CH(OH)-CH(CH_{3})_{2}. The figure below gives its skeletal formula.

OH4-methylpent-1-en-3-ol
  • a) Rank in decreasing priority the groups −CH2OH-CH_{2}OH, −CHO-CHO, −COOH-COOH and −CH(CH3)2-CH(CH_{3})_{2}.
  • b) Rank in decreasing priority −CH=CH2-CH=CH_{2}, −CH(CH3)2-CH(CH_{3})_{2}, −C≡CH-C\equiv CH and −C(CH3)3-C(CH_{3})_{3}.
  • c) Locate the asymmetric carbon of 4-methylpent-1-en-3-ol and rank its four groups.
  • d) One enantiomer, viewed with the hydrogen toward the back, shows the path OH→OH\rightarrow vinyl →\rightarrow isopropyl clockwise. Is it RR or SS? What would a student who ranks isopropyl before vinyl have concluded?
  • e) The double bond of this enantiomer is hydrogenated, without touching the asymmetric carbon. Name the product, then give its descriptor. Has the molecule undergone an inversion?

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  • a) −COOH>−CHO>−CH2OH>−CH(CH3)2-COOH>-CHO>-CH_{2}OH>-CH(CH_{3})_{2}
  • b) −C≡CH>−C(CH3)3>−CH=CH2>−CH(CH3)2-C\equiv CH>-C(CH_{3})_{3}>-CH=CH_{2}>-CH(CH_{3})_{2}
  • c) C3: OHOH > vinyl > isopropyl > H
  • d) R; the error gives S
  • e) 2-methylpentan-3-ol, S, no inversion
a)

The first four atoms are carbons: we compare the attached sets. −COOH-COOH: (O, O, O), the oxygen of the C=OC=O being duplicated. −CHO-CHO: (O, O, H). −CH2OH-CH_{2}OH: (O, H, H). −CH(CH3)2-CH(CH_{3})_{2}: (C, C, H). Ranking: −COOH>−CHO>−CH2OH>−CH(CH3)2-COOH>-CHO>-CH_{2}OH>-CH(CH_{3})_{2}. A big carbon group loses against a small oxygen group: it is the atomic number that counts, never the size.

b)

At the first rank, ethynyl and tert-butyl carry (C, C, C), vinyl and isopropyl (C, C, H). To separate ethynyl from tert-butyl, we go down one rank: the real terminal carbon of ethynyl carries (C, C, H) thanks to its duplicates, whereas each methyl group of tert-butyl carries only (H, H, H). Same reasoning for vinyl, whose CH2CH_{2} carries (C, H, H), against (H, H, H) for the methyl groups of isopropyl. Ranking: −C≡CH>−C(CH3)3>−CH=CH2>−CH(CH3)2-C\equiv CH>-C(CH_{3})_{3}>-CH=CH_{2}>-CH(CH_{3})_{2}.

c)

C3 carries OHOH, a vinyl group, an isopropyl group and a hydrogen: four different groups, so it is the asymmetric carbon. Ranking: OHOH (oxygen), then vinyl, which beats isopropyl at the second rank as in b), then isopropyl, then H.

d)

With group 4 toward the back, the path 1, 2, 3 is clockwise: the enantiomer is RR. The student who swaps vinyl and isopropyl reads the path OH→OH\rightarrow isopropyl →\rightarrow vinyl, counterclockwise, and concludes SS: a single priority error reverses the descriptor.

e)

The vinyl group becomes an ethyl group: CH3CH2−CH(OH)−CH(CH3)2CH_{3}CH_{2}-CH(OH)-CH(CH_{3})_{2}, 2-methylpentan-3-ol. C3 remains asymmetric, but the priorities have changed: ethyl (C, H, H) now ranks AFTER isopropyl (C, C, H). Groups 2 and 3 swap ranks without anything moving in space: the path becomes counterclockwise and the product is SS. No bond of the asymmetric carbon was broken, there is no inversion: only the name has changed.

The thread: RR and SS are labels drawn from the priorities, not a geometric property; a reaction that modifies a substituent can change the label without touching the geometry.

Exercise 13: Z or E: when cis and trans are no longer enough

The terms cis and trans apply unambiguously only if each carbon of the double bond carries a hydrogen. The descriptors ZZ and EE, on the other hand, always apply: on each carbon, we find the priority group by the CIP rules; the two priority groups on the same side give ZZ, on opposite sides EE.

The figure draws the two stereoisomers described in a) and b).

Ha)ClHBrb)
  • a) In a stereoisomer of 3-methylpent-2-ene, CH3CH=C(CH3)CH2CH3CH_{3}CH=C(CH_{3})CH_{2}CH_{3}, the two methyl groups are on the same side of the double bond. Is it ZZ or EE?
  • b) In a stereoisomer of 2-bromo-1-chloroprop-1-ene, ClCH=C(Br)CH3ClCH=C(Br)CH_{3}, the chlorine and the bromine are on the same side. Is it ZZ or EE? And the hydrogen and the methyl group?
  • c) A carbon of a double bond carries −CH2OH-CH_{2}OH and −CH(CH3)2-CH(CH_{3})_{2}. Which has priority?
  • d) How many stereoisomers does hexa-2,4-diene CH3CH=CH−CH=CHCH3CH_{3}CH=CH-CH=CHCH_{3} have? And hepta-2,4-diene CH3CH=CH−CH=CHCH2CH3CH_{3}CH=CH-CH=CHCH_{2}CH_{3}?
  • e) Cyclohexene exists in only one configuration, cis. Why? What is the smallest cycloalkene whose trans isomer can be isolated at room temperature?

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  • a) (E)
  • b) (Z)
  • c) −CH2OH-CH_{2}OH
  • d) 3 and 4 stereoisomers
  • e) Impossible twist in a six-membered ring; trans-cyclooctene
a)

On C2, we compare CH3CH_{3} and H: the methyl group wins. On C3, we compare CH3CH_{3} and CH2CH3CH_{2}CH_{3}: the ethyl group wins, (C, H, H) against (H, H, H). The two methyl groups are on the same side, so the methyl group of C2 and the ethyl group of C3 are on opposite sides: it is (E)(E)-3-methylpent-2-ene. The trap is to look at the two identical groups and conclude “cis, so ZZ”.

b)

On C1, Cl beats H; on C2, Br beats CH3CH_{3}. Cl and Br on the same side: (Z)(Z)-2-bromo-1-chloroprop-1-ene. The hydrogen and the methyl group are then necessarily on the same side as well, on the other side of the double bond.

c)

First rank: −CH2OH-CH_{2}OH carries (O, H, H) and −CH(CH3)2-CH(CH_{3})_{2} carries (C, C, H). We compare the first atom of each set: O beats C, and the comparison stops there. −CH2OH-CH_{2}OH has priority, even though it is smaller.

d)

Hexa-2,4-diene has two stereogenic double bonds, so at most 22=42^{2}=4 combinations: (2Z,4Z), (2E,4E), (2Z,4E) and (2E,4Z). But the molecule is symmetrical: (2Z,4E) read from the other end is (2E,4Z), the same molecule. There are therefore 3 stereoisomers. Hepta-2,4-diene lacks this symmetry, one end finishing with a methyl group and the other with an ethyl group: the 4 combinations are distinct.

e)

In a six-membered ring, joining the two carbons of the double bond to two opposite positions would impose an enormous twist of the π\pi bond: trans-cyclohexene cannot exist as a stable molecule. A cyclic chain long enough to go around is needed; the smallest trans cycloalkene isolable at room temperature is trans-cyclooctene, with eight carbons.

The thread: we never look at identical groups, we look on EACH carbon for the priority group, and we count stereoisomers by looking for symmetries.

Exercise 14: Problem: the eight alcohols of formula C5H12O

A laboratory arranges its alcohol bottles by molecular formula. On the shelf of C5H12OC_{5}H_{12}O, there must be only alcohols, and no ethers at all.

  • a) Calculate the degree of unsaturation of C5H12OC_{5}H_{12}O. What can be concluded about the structure?
  • b) Count and name all the alcohols of formula C5H12OC_{5}H_{12}O.
  • c) Classify them: how many are primary, secondary and tertiary?
  • d) Which ones have an asymmetric carbon? How many bottles would be needed to store all the stereoisomers of these alcohols?
  • e) One bottle contains a secondary, chiral alcohol with a branched chain. Another contains an achiral secondary alcohol. Identify them.

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  • a) DU=0DU=0
  • b) 8 alcohols
  • c) 4 primary, 3 secondary, 1 tertiary
  • d) Pentan-2-ol, 2-methylbutan-1-ol, 3-methylbutan-2-ol; 11 bottles
  • e) 3-methylbutan-2-ol; pentan-3-ol
a)

DU=2(5)+2−122=0DU=\frac{2(5)+2-12}{2}=0: neither ring nor multiple bond. The isomers are all acyclic and saturated, the oxygen being either in an OHOH or in a C−O−CC-O-C bond.

b)

We shorten the chain one carbon at a time. Chain of five: pentan-1-ol, pentan-2-ol, pentan-3-ol. Chain of four with one methyl group: 2-methylbutan-1-ol, 2-methylbutan-2-ol, 3-methylbutan-2-ol, 3-methylbutan-1-ol. Chain of three with two methyl groups: 2,2-dimethylpropan-1-ol. That makes 3+4+1=83+4+1=8 alcohols. The false duplicates to avoid: “pentan-4-ol” is pentan-2-ol, “2-methylbutan-3-ol” is 3-methylbutan-2-ol.

c)

Primary, the carbon of the OHOH bonded to a single carbon: pentan-1-ol, 2-methylbutan-1-ol, 3-methylbutan-1-ol, 2,2-dimethylpropan-1-ol, that is 4. Secondary: pentan-2-ol, pentan-3-ol, 3-methylbutan-2-ol, that is 3. Tertiary: 2-methylbutan-2-ol, alone, that is 1.

d)

Pentan-2-ol: C2 carries OH, H, CH3CH_{3} and propyl, it is asymmetric. 2-Methylbutan-1-ol: C2 carries H, CH3CH_{3}, ethyl and CH2OHCH_{2}OH, asymmetric. 3-Methylbutan-2-ol: C2 carries OH, H, CH3CH_{3} and isopropyl, asymmetric. The other five have no carbon with four different groups: C3 of pentan-3-ol carries two ethyl groups, C2 of 2-methylbutan-2-ol two methyl groups. Three chiral alcohols, each as two enantiomers: 5+3×2=115+3\times 2=11 bottles.

e)

Secondary and chiral: pentan-2-ol and 3-methylbutan-2-ol; the only one with a branched chain is 3-methylbutan-2-ol. The only achiral secondary alcohol is pentan-3-ol, whose functional carbon carries two identical ethyl groups.

The thread: we count by shortening the chain, we classify on the carbon of the OHOH, and we look for chirality carbon by carbon, being wary of identical groups.

OHpentan-1-olIOH*pentan-2-olII, chiralOHpentan-3-olIIHO*2-methylbutan-1-olI, chiralOH2-methylbutan-2-olIIIOH*3-methylbutan-2-olII, chiralHO3-methylbutan-1-olIOH2,2-dimethylpropan-1-olII, II, III: class of the alcohol; *: chiral carbon

Exercise 15: Problem: menthol, three stereocentres and a chair

Menthol gives peppermint its cool taste. It is a cyclohexane bearing three substituents: an OHOH group on one carbon, an isopropyl group −CH(CH3)2-CH(CH_{3})_{2} on the neighbouring carbon, and a methyl group on the carbon in position 1,4 relative to the isopropyl. Natural menthol is (−)-menthol, of configuration (1R,2S,5R).

The figure gives the flat skeletal formula of menthol, with no indication of stereochemistry.

OH
  • a) Give the molecular formula of menthol and check it with the degree of unsaturation.
  • b) Build its systematic name, justifying carbon 1 and the direction of numbering.
  • c) How many asymmetric carbons does menthol have? How many stereoisomers exist, and how many pairs of enantiomers?
  • d) Give the configuration of (+)-menthol, the enantiomer of natural menthol. How many diastereomers does (−)-menthol have?
  • e) In the most stable chair of (−)-menthol, the three substituents are equatorial. How many are axial in the other chair? Why is (−)-menthol the most stable of the stereoisomers?

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  • a) C10H20OC_{10}H_{20}O, DU=1DU=1
  • b) 5-methyl-2-(propan-2-yl)cyclohexan-1-ol
  • c) 3 centres, 8 stereoisomers, 4 pairs
  • d) (1S,2R,5S); 6 diastereomers
  • e) 3 axial; the only all-equatorial isomer
a)

Six ring carbons, three from the isopropyl group and one from the methyl group: 10 carbons. A saturated ring bearing an OHOH: C10H20OC_{10}H_{20}O. Check: DU=2(10)+2−202=1DU=\frac{2(10)+2-20}{2}=1, exactly the ring.

b)

The alcohol is the only functional group: it gives the suffix -ol and its carbon receives locant 1. We then go around in the direction that gives the lowest locants to the substituents: toward the isopropyl group, we find isopropyl on 2 and methyl on 5, that is {2, 5}; in the other direction, {3, 6}. The substituents are listed in alphabetical order: 5-methyl-2-(propan-2-yl)cyclohexan-1-ol, which is also written 2-isopropyl-5-methylcyclohexanol.

c)

C1 carries OH, H and two different ring paths; C2 carries the isopropyl group, H and two different paths; C5 carries the methyl group, H and two different paths, one leading toward the OHOH, the other toward the isopropyl group. Three asymmetric carbons. The molecule has no internal symmetry, so no meso form: 23=82^{3}=8 stereoisomers, that is 4 pairs of enantiomers, menthol, neomenthol, isomenthol and neoisomenthol.

d)

The enantiomer reverses all three centres: (+)-menthol is (1S,2R,5S). (−)-Menthol has 8 stereoisomers in all; apart from itself and its enantiomer, the other 6 are its diastereomers. The trap is to invert a single centre and call the result an enantiomer: it is a diastereomer.

e)

The ring flip turns each equatorial position into an axial one: in the other chair, the 3 substituents are axial, which is very unfavourable. (−)-Menthol, and its enantiomer, are the only stereoisomers that can place all three groups equatorial at once; all the others must put at least one axial in their best chair.

The thread: we count the centres, we multiply by two for each in the absence of symmetry, and the chair tells which of the eight stereoisomers is the most stable.

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