Organic Chemistry 202-SNU-RE • CEGEP, Montreal

Corrected exercises: SN1, SN2, E1 and E2, substitution and elimination (202-SNU-RE)

Nucleophilic substitution, SN1S_{N}1 and SN2S_{N}2, and elimination, E1E1 and E2E2, are the heart of a first organic chemistry course at CEGEP. This series prepares you for the exam: writing the mechanism with its curved arrows, listing ALL the products, major and minor, and giving their configuration, R or S, Z or E. By the end, you can say in four questions which reaction takes place, or why none does. It is written for students taking Organic Chemistry 202-SNU-RE, an elective in the Natural Science program that follows General Chemistry 202-SN1-RE.

Each exercise takes up a mistake found on real papers: an E1E1 written where a strong base forces an E2E2 (exercises 1 and 8), arrows drawn backwards and a charged NaClNaCl (exercise 2), the letter R or S given without ranking the groups again (exercise 3), fluorine mistaken for a leaving group (exercise 4), an acid catalyst written into the balanced equation (exercise 5), an amine and an acid declared “no reaction” (exercises 1 and 8), the substitution product forgotten among the minor products (exercise 6).

The situations: alkyl halides and alcohols treated with bases, nucleophiles and acids; choosing the reagent that gives the desired ether or alkene (exercise 7); the methylation of noradrenaline to adrenaline, an SN2S_{N}2 in living things (exercise 9); the laboratory preparation of cyclohexene by two routes, with their yields (exercise 10). Exercise 11 has you complete twelve reactions, from the SN2S_{N}2 to no reaction at all. Every mechanism in the solutions is drawn arrow by arrow.

All the classics of the course are here: ranking leaving groups by the pKapK_{a} of their conjugate acid and the sp2sp^{2} carbon that does not react (exercise 1), the effect of the solvent (exercise 2), rate laws (exercise 3), the tosylate route and the hydride shift (exercise 4), the four families of reagents and the intramolecular SN2S_{N}2 that closes a ring (exercise 7).

11 corrected exercises • 110 points • 150 minutes

This chapter is part of 202-SNU-RE, every chapter with its set and sheet Before you start Revision sheet: the traps and the method for this chapter

Self-checking set Type your answers and check them question by question: the page tells you right or wrong before you open the solution. With an account, every answer right on the first try earns points, and your right answers stay filled in when you come back.

Course recap

  • • A good leaving group is a WEAK BASE: I−>Br−>Cl−I^{-}>Br^{-}>Cl^{-}. F−F^{-}, HO−HO^{-}, RO−RO^{-} and NH2−NH_{2}^{-} do not leave. An alcohol reacts only once protonated: the leaving group is then H2OH_{2}O.
  • • Before anything else: an acid-base reaction is faster than all the rest. An amine and an acid give an ammonium salt.
  • • SN2S_{N}2: one step, two arrows, backside attack, INVERSION of geometry; methyl, primary or secondary; strong nucleophile; polar aprotic solvent.
  • • SN1S_{N}1: two steps, planar carbocation, RACEMIZATION; tertiary, benzylic or allylic; weak, neutral nucleophile; protic solvent. With a neutral nucleophile, a final deprotonation.
  • • E2E2: one step, three arrows, strong base; H and leaving group anti. Small base: Zaitsev, the most substituted alkene; bulky base: Hofmann, the least substituted.
  • • E1E1: two steps, carbocation, weak base, heat; dehydration of alcohols in concentrated acid; Zaitsev; the acid is a catalyst, returned at the end.
  • • Heat always favours elimination. Charges are conserved in every equation, and Na+Na^{+} remains a spectator.
  • • R or S: rank the four groups of the PRODUCT again. Z or E: rank the two groups on each carbon of the double bond.
  • • Substitution and elimination take place only at an sp3sp^{3} carbon: a halogen on a benzene ring or on a double bond does not leave. F−F^{-} and CN−CN^{-} do not leave either: the bond is too strong.
  • • Rate laws: SN2S_{N}2, v=k[RX][Nu]v=k[RX][Nu]; E2E2, v=k[RX][B]v=k[RX][B]; SN1S_{N}1 and E1E1, v=k[RX]v=k[RX].
  • • A carbocation rearranges toward a more stable one by a shift of a neighbouring hydride or methyl. A tosylate, prepared with TsClTsCl and pyridine, makes an OH leave with no carbocation and no loss of configuration.

Part A: the basics (/50)

Exercise 1: The diagnosis before the first arrow

On an exam, a good share of the marks is lost before the first arrow: an E1E1 is drawn where a strong base forces an E2E2, or a substitution is attempted on a molecule that has no leaving group. Four questions, always asked in the same order, prevent these errors.

1)Is there a GOOD leaving group, that is, a group that leaves as a weak base (I−I^{-}, Br−Br^{-}, Cl−Cl^{-}, or H2OH_{2}O after protonation of an alcohol)?2)Is the reagent a strong base, a good nucleophile that is only weakly basic, or a neutral, weak species?3)What is the class of the carbon bearing the leaving group?4)Does an acid-base reaction, faster than everything else, come into play?

Pairs studied (substrate and reagent):1)1-iodopentane and sodium cyanide in dimethyl sulfoxide (DMSO)2)3-bromo-3-ethylpentane in methanol at 25 °C3)the same bromide and concentrated potassium hydroxide in ethanol at reflux4)1-methylcyclohexan-1-ol and concentrated sulfuric acid, heated5)1-fluorohexane and sodium hydroxide in water6)methoxycyclohexane and sodium ethanoate, heated7)pentan-1-amine and hydrobromic acid8)hexan-1-ol and sodium bromide in water, without acid.The figure shows all eight pairs.

Ipair 1+ NaCNin DMSOBrpair 2+ methanolat 25 °CBrpair 3+ conc. KOHethanol, refluxHOpair 4+ conc. H₂SO₄heatFpair 5+ NaOHin waterOpair 6+ CH₃COONaheatNH₂pair 7+ HBrin waterOHpair 8+ NaBr in waterno acid
  • a) For pairs 1 to 4, name the reaction that gives the major product.
  • b) Same question for pairs 5 to 8.
  • c) For each pair where the substrate undergoes neither substitution nor elimination, state precisely what stands in the way and what would have to change to obtain a substitution.
  • d) Pairs 2 and 3 have the same substrate. Explain why methanol cannot carry out an E2E2, and why concentrated potassium hydroxide leaves no time for an SN1S_{N}1.
  • e) Data, pKapK_{a} of the conjugate acids: HIHI −10-10; HClHCl −7-7; H3O+H_{3}O^{+} −1.7-1.7; H2OH_{2}O 15.715.7; NH3NH_{3} 3838. Among I−I^{-}, Cl−Cl^{-}, H2OH_{2}O, HO−HO^{-} and NH2−NH_{2}^{-}, which is the best leaving group, and which is the worst? Then explain why F−F^{-} (pKapK_{a} of HFHF: 3.2) and CN−CN^{-} (pKapK_{a} of HCNHCN: 9.2), bases far weaker than HO−HO^{-}, almost never leave all the same.
  • f) Bromobenzene and bromoethene, heated with sodium hydroxide, give neither substitution nor elimination. Bromine is a good leaving group, though: why does it not leave?

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  • a) 1: SN2S_{N}2; 2: SN1S_{N}1; 3: E2E2; 4: E1E1
  • b) 5 and 6: no reaction; 7: acid-base only; 8: no reaction
  • c) 5: fluorine does not leave, use a bromide; 6 and 8: alkoxide or HO−HO^{-} does not leave, protonate the oxygen with HBrHBr or HIHI; 7: the reaction does take place, it is acid-base
  • d) Methanol is too weak a base for an E2E2; concentrated HO−HO^{-} does the E2E2 faster than ionization
  • e) Best I−I^{-}, worst NH2−NH_{2}^{-}; F−F^{-} and CN−CN^{-} do not leave, their bond to carbon is too strong
  • f) No reaction: the bromine is on an sp2sp^{2} carbon

Method: the four questions, in order, for each pair. The class of the carbon comes only third: it is useless if there is no leaving group, and it does not decide alone between E1E1 and E2E2.

a)

Pair 1: I−I^{-} is an excellent leaving group; CN−CN^{-} is a good nucleophile and a weak base; primary carbon; polar aprotic solvent.

SN2S_{N}2: hexanenitrile CH3(CH2)4CNCH_{3}(CH_{2})_{4}CN, the chain gains one carbon.

Pair 2: tertiary bromide, neutral and weak methanol, protic solvent, 25 °C.

Neither SN2S_{N}2 (the carbon is too crowded) nor E2E2 (no strong base): the tertiary carbocation forms on its own. SN1S_{N}1 is major: 3-ethyl-3-methoxypentane, with a little 3-ethylpent-2-ene by E1E1.

Pair 3: same substrate, but a strong, concentrated base, at reflux: E2E2. Product: 3-ethylpent-2-ene, the only possible alkene, since the three neighbouring carbons are equivalent.

Pair 4: tertiary alcohol, concentrated acid, heat: protonation, loss of water, tertiary carbocation, loss of a proton. E1E1: 1-methylcyclohexene is major, with a trisubstituted double bond.

Pitfall: pairs 2 and 3, same substrate, two mechanisms. It is the REAGENT that decides between E1E1 and E2E2, not the class of the carbon.

b)

Pair 5: no reaction. F−F^{-} leaves far less readily than Cl−Cl^{-} (pKapK_{a} of HFHF: 3.2, against −7-7 for HClHCl), and above all the C−FC-F bond, 485 kJ/mol, is the strongest of the carbon-halogen bonds.

Pair 6: no reaction. An alkoxide ion, CH3O−CH_{3}O^{-} or C6H11O−C_{6}H_{11}O^{-}, would have to be expelled, and it is a strong base (pKapK_{a} of the corresponding alcohol close to 16). The ethanoate, a weak nucleophile, changes nothing.

Pair 7: acid-base only. An amine is a BASE and HBrHBr a strong acid: the instantaneous proton transfer gives pentylammonium bromide CH3(CH2)4NH3+ Br−CH_{3}(CH_{2})_{4}NH_{3}^{+}\,Br^{-}.

Pair 8: no reaction. Without acid, the leaving group would be HO−HO^{-}, a strong base (pKapK_{a} of water: 15.7). Bromide is a good nucleophile all the same: it is the DEPARTURE that blocks, not the attack.

Pitfall: writing “no good leaving group” for pair 7. Question 4 comes first: an amine and an acid always react, by proton transfer.

c)

Pair 5: replace the fluorine with a bromine or an iodine. 1-Bromohexane undergoes SN2S_{N}2 with sodium hydroxide and gives hexan-1-ol.

Pair 6: protonate the oxygen of the ether. With concentrated, hot HBrHBr or HIHI, the leaving group becomes a neutral alcohol, and the ether is cleaved.

Pair 8: protonate the oxygen. With NaBrNaBr and concentrated H2SO4H_{2}SO_{4}, or with HBrHBr directly, water becomes the leaving group and 1-bromohexane is obtained by SN2S_{N}2. One can also go through a tosylate, or use PBr3PBr_{3}.

Pair 7: nothing is missing, the acid-base reaction takes place. For the amine to act as a nucleophile, it must be paired with an alkyl halide, not an acid.

d)

Methanol: an E2E2 requires a base strong enough to pull a proton off a neutral molecule WHILE the bromide leaves, in a single step. Methanol is a very weak base: it can react only once the carbocation has formed, that is, by SN1S_{N}1 or by E1E1.

Potassium hydroxide: concentrated HO−HO^{-} pulls off a neighbouring hydrogen at the first encounter. The rate of the E2E2, v=k[RBr][HO−]v=k[RBr][HO^{-}], grows with the concentration of the base, that of the ionization does not: at high concentration the E2E2 wins the race, and the SN2S_{N}2 stays blocked on a tertiary carbon.

e)

A leaving group is better the WEAKER a base it is, so the STRONGER the conjugate acid, with a low pKapK_{a}: it carries off the electron pair and stays stable once gone.

I− (−10)>Cl− (−7)>H2O (−1.7)≫HO− (15.7)>NH2− (38)\displaystyle I^{-}\,(-10)>Cl^{-}\,(-7)>H_{2}O\,(-1.7)\gg HO^{-}\,(15.7)>NH_{2}^{-}\,(38)

Best: I−I^{-}; worst: NH2−NH_{2}^{-}. Between H2OH_{2}O and HO−HO^{-} there are 17.4 pKapK_{a} units: that is the whole gain from protonating an alcohol.

The tosylate TsO−TsO^{-} (pKapK_{a} of TsOHTsOH: −2.8-2.8), whose charge is spread over three oxygens, leaves as well as a heavy halide: it is the second way to make an OH leave (exercise 4).

F−F^{-} and CN−CN^{-}: low basicity is not enough, the bond to carbon must also break. The C−FC-F bond, 485 kJ/mol, is the strongest of the carbon-halogen bonds; C−CNC-CN is a carbon-carbon bond, strong as well.

Pitfall: “weak base, therefore good leaving group” holds for I−I^{-}, Br−Br^{-}, Cl−Cl^{-}, water and the sulfonates, not for F−F^{-} or CN−CN^{-}.

f)

The bromine is carried by an sp2sp^{2} carbon, of the ring or of the double bond. Substitution and elimination take place only at an sp3sp^{3} carbon.

SN1S_{N}1: an sp2sp^{2} carbocation would be far too unstable; the more s character an orbital has, the more tightly it holds its electrons near the nucleus, and the less the carbon can bear a positive charge.

SN2S_{N}2: backside attack is blocked by the ring or by the double bond, and the shorter C−BrC-Br bond is stronger.

Rule: look for a good leaving group ON an sp3sp^{3} carbon. An exception worth knowing: sodium amide NaNH2NaNH_{2}, a very strong base, eliminates a vinyl halide and gives an alkyne.

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Exercise 2: Curved arrows: from the electron pair to the atom, and charges that are conserved

A curved arrow describes the movement of an electron PAIR. It always starts at a pair, lone or bonding, and points to the atom that receives it or to the bond that forms.

The figure reproduces a student's work for the reaction of (bromomethyl)cyclohexane with sodium ethanethiolate CH3CH2S−Na+CH_{3}CH_{2}S^{-}Na^{+} in dimethylformamide (DMF), a polar aprotic solvent. The student's arrows are in purple.

BrS⁻Na⁺S+ CH₃CH₂S⁻ + NaBr⁺student's work, arrows in purple
  • a) Find the two arrow errors in the student's work. For each, say where the arrow should have started and where it should have ended.
  • b) Name the mechanism and write it correctly. How many curved arrows does it have, and how many steps?
  • c) The student's balanced equation has two errors involving charged species. Correct it, then check that the total charge is the same on both sides.
  • d) Now bromocyclopentane is treated with sodium ethoxide, hot. The reaction is an E2E2: describe each of its arrows, from start to end, and give the products.
  • e) Without drawing: how many arrows does an SN1S_{N}1 by the iodide ion count, all steps together, and how many does an E1E1 on a tertiary halide count?
  • f) The SN2S_{N}2 in b) would be much slower in ethanol than in DMF. Why?

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  • a) Arrow 1: from the lone pair on sulfur to the carbon; arrow 2: from the middle of C−BrC-Br to the bromine
  • b) SN2S_{N}2: two arrows, one step
  • c) C6H11CH2Br+CH3CH2S−+Na+→C6H11CH2SCH2CH3+Na++Br−C_{6}H_{11}CH_{2}Br+CH_{3}CH_{2}S^{-}+Na^{+}\rightarrow C_{6}H_{11}CH_{2}SCH_{2}CH_{3}+Na^{+}+Br^{-}, charge 0 on each side
  • d) Base to H, C−HC-H to C−CC-C, C−BrC-Br to Br: cyclopentene, ethanol, Br−Br^{-}
  • e) SN1S_{N}1: 2 arrows; E1E1: 3 arrows
  • f) Ethanol, being protic, traps the anion in hydrogen bonds; DMF leaves it bare
a)

Arrow 1: on the student's work, it starts at the carbon and points to the sulfur. That is backwards: a δ+\delta^{+} carbon has no electron pair to give.

Correct: the arrow starts at a lone pair on SULFUR and points to the CH2CH_{2} carbon.

Arrow 2: it starts at the bromine and points to the C−BrC-Br bond. Again backwards: the bond breaks and its two electrons leave with the bromine.

Correct: the arrow starts at the MIDDLE of the C−BrC-Br bond and points to the bromine atom.

Pitfall: an arrow does not say who “goes toward” whom. It says where the electrons go, so it always starts at an electron pair, never at an atom that has none to give.

b)

Primary carbon, strong nucleophile that is only weakly basic, polar aprotic solvent: SN2S_{N}2.

Two arrows, a single step: sulfur attacks the carbon from the side opposite the bromine, and the C−BrC-Br bond breaks in the same motion.

Product: [(ethylsulfanyl)methyl]cyclohexane C6H11CH2SCH2CH3C_{6}H_{11}CH_{2}SCH_{2}CH_{3}, a thioether.

c)

First error: the thiolate is CONSUMED. It has gone into the product, so it cannot reappear on the right.

Second error: NaBr+NaBr^{+} does not exist. The Na+Na^{+} ion is a spectator from start to finish, and the bromide leaves as Br−Br^{-}: together they form a neutral salt.

C6H11CH2Br+CH3CH2S−+Na+→C6H11CH2SCH2CH3+Na++Br−\displaystyle C_{6}H_{11}CH_{2}Br+CH_{3}CH_{2}S^{-}+Na^{+}\rightarrow C_{6}H_{11}CH_{2}SCH_{2}CH_{3}+Na^{+}+Br^{-}

Charges: on the left 0−1+1=00-1+1=0; on the right 0+1−1=00+1-1=0. An equation whose charges are not conserved is wrong, whatever the mechanism.

d)

Arrow 1: from a lone pair on the oxygen of CH3CH2O−CH_{3}CH_{2}O^{-} to a hydrogen carried by a carbon NEXT TO the one bearing the bromine.

Arrow 2: from the middle of the C−HC-H bond to the middle of the C−CC-C bond, where the double bond forms.

Arrow 3: from the middle of the C−BrC-Br bond to the bromine.

Products: cyclopentene, ethanol and Br−Br^{-}, with Na+Na^{+} a spectator. Three arrows, one step; the hydrogen removed and the bromine must lie on opposite faces of the ring (anti).

e)

SN1S_{N}1: step 1, one arrow, from the C−XC-X bond to XX; step 2, one arrow, from a lone pair on I−I^{-} to the carbocation. Two arrows in all.

E1E1: step 1, the same arrow; step 2, two arrows, from the base to H and then from the C−HC-H bond to the C−CC-C bond. Three arrows in all.

The rule of thumb holds: a substitution counts two arrows, an elimination three, in one step or in two. With a neutral nucleophile such as water, the substitution adds a final deprotonation.

f)

Ethanol is a PROTIC solvent: its O-H hydrogen forms hydrogen bonds with the CH3CH2S−CH_{3}CH_{2}S^{-} anion, which becomes surrounded by a cage of solvent that must be broken before it can attack.

DMF, polar but APROTIC, dissolves the salt by surrounding Na+Na^{+} and leaves the anion nearly bare, hence more reactive.

Rule: SN2S_{N}2 by an anion, polar aprotic solvent (DMF, DMSO, propanone, acetonitrile); SN1S_{N}1 and E1E1, protic solvent, which stabilizes the carbocation and the leaving anion.

BrS⁻Na⁺one stepS+ Na⁺ + Br⁻SN2: two arrows, each from an electron pair
The corrected work: the SN2 in two arrows, each starting at an electron pair.
BrHO⁻heat+ CH₃CH₂OH+ Br⁻E2: three arrows, one step;H and Br anti, on opposite sides of the ring
The E2 of question d): three arrows, one step, H and Br anti.

Exercise 3: R or S after substitution: inversion, racemization and the letter that misleads

The SN2S_{N}2 attacks the carbon from behind and turns it inside out like an umbrella: its geometry is INVERTED. The SN1S_{N}1 goes through a planar carbocation, attacked on both faces: a RACEMIC mixture is obtained. But the letter R or S is read from the priorities, not from the geometry.

The figure shows the three substrates as wedge-and-dash structures, with their reagent: A, (S)-2-iodoheptane and sodium azide NaN3NaN_{3} in DMSO; B, (R)-3-bromo-3-methylhexane in a warm mixture of water and propanone; C, (S)-2-bromopentan-1-ol and sodium cyanide in DMSO.

IA: (S)-2-iodoheptane+ NaN₃, DMSOBrB: (R)-3-bromo-3-methylhexane+ water-propanone, warmHOBrC: (S)-2-bromo-pentan-1-ol+ NaCN, DMSO
  • a) A: name the mechanism, then give the product with its configuration.
  • b) B: give the substitution product and say what a polarimeter reads. Why does the student who writes “(S)-3-methylhexan-3-ol” lose the mark?
  • c) C: rank the four groups on the asymmetric carbon before and after the reaction, then give the configuration of the product. Explain why it carries the same letter as the substrate, even though the geometry has been inverted.
  • d) A student claims: “an SN2S_{N}2 always turns an R into an S.” Correct this sentence using A and C.
  • e) Rate laws. For A, what happens to the initial rate if the concentration of N3−N_{3}^{-} is doubled? If that of the substrate is doubled? For B, if the concentration of the substrate is doubled? If sodium azide is added to the mixture?

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  • a) SN2S_{N}2: (R)-2-azidoheptane
  • b) SN1S_{N}1: racemic 3-methylhexan-3-ol, zero optical rotation
  • c) After: CH2OH>CN>CH_{2}OH>CN> propyl >H>H; (S)-2-(hydroxymethyl)pentanenitrile
  • d) False: the geometry always inverts, the letter only if the entering group takes the rank of the leaving group
  • e) A: factor 2 and 2, v=k[RI][N3−]v=k[RI][N_{3}^{-}]; B: factor 2 and 1, v=k[RBr]v=k[RBr]
a)

Secondary carbon, N3−N_{3}^{-} an excellent nucleophile and a weak base, aprotic DMSO: SN2S_{N}2.

Before: I>I> pentyl chain >CH3>H>CH_{3}>H. After: N3>N_{3}> pentyl chain >CH3>H>CH_{3}>H.

The entering group takes rank 1, like the leaving group: inverted geometry gives an inverted letter. Product: (R)-2-azidoheptane.

b)

Tertiary carbon, weak and neutral water, protic solvent: SN1S_{N}1. Water attacks the planar carbocation on both faces, then the oxonium ion loses an H+H^{+}.

Product: 3-methylhexan-3-ol, a racemic mixture of (R) and (S). The polarimeter reads zero optical rotation, or nearly: a slight excess of the inverted product appears when the bromide ion, still close by, shields one face. A few alkenes also form by E1E1.

Pitfall: writing “(S)” amounts to applying the SN2S_{N}2 rule to an SN1S_{N}1. The mark is lost twice: wrong mechanism and wrong stereochemistry.

c)

Before: Br>CH2OH>Br>CH_{2}OH> propyl >H>H. The CH2OHCH_{2}OH carbon carries (O,H,H)(O,H,H), that of the propyl (C,H,H)(C,H,H): O beats C.

After, CH2OHCH_{2}OH and C≡NC\equiv N must be separated. Both begin with a carbon, so we compare their substituents: (O,H,H)(O,H,H) for CH2OHCH_{2}OH, (N,N,N)(N,N,N) for CNCN, the triple bond counting three times.

We compare the heaviest atom of each list first: O beats N, so CH2OH>CNCH_{2}OH>CN.

After: CH2OH>CN>CH_{2}OH>CN> propyl >H>H.

The SN2S_{N}2 inverted the geometry, but the entering group took only rank 2, and CH2OHCH_{2}OH rose to rank 1: the first two ranks swapped places. The two reversals cancel. Product: (S)-2-(hydroxymethyl)pentanenitrile.

Pitfall: we compare atom by atom, at the first point of difference. A single oxygen beats three nitrogens.

d)

The sentence is false. An SN2S_{N}2 always inverts the GEOMETRY, not necessarily the letter.

Correct sentence: the letter flips when the entering group takes, in the priorities, the rank of the leaving group (case A); it may stay the same otherwise (case C). Redraw the product, then rank its four groups again.

e)

A, SN2S_{N}2: a single step, in which the two reactants meet. v=k[RI][N3−]v=k[RI][N_{3}^{-}]: doubling [N3−][N_{3}^{-}] doubles the rate, and so does doubling [RI][RI].

B, SN1S_{N}1: the slow step, the breaking of the C−BrC-Br bond, involves only the substrate. v=k[RBr]v=k[RBr]: doubling the substrate doubles the rate; adding a nucleophile does not change it.

The added azide changes only the PRODUCT: part of the carbocation gives the azide instead of the alcohol.

The same logic holds for eliminations: E2E2, v=k[RX][B]v=k[RX][B]; E1E1, v=k[RX]v=k[RX]. That is the origin of the numbers 1 and 2 in the names.

N₃A: (R)-2-azidoheptaneinversion, the letter changesHOCNC: (S)-2-(hydroxymethyl)-pentanenitrileinversion, the letter stays

Exercise 4: Substituting at an alcohol: protonate first, and leave the fluorine in place

An alcohol has no good leaving group: HO−HO^{-} is a strong base. In acidic medium, the oxygen is protonated and the leaving group becomes a water molecule, which leaves without difficulty. Every substitution of an alcohol by HXHX therefore begins with an acid-base step.

The figure shows the four alcohols studied: A, 1-ethylcyclohexan-1-ol with concentrated HBrHBr; B, pentan-1-ol with concentrated, hot HBrHBr; C, 5-fluoro-2-methylpentan-2-ol with concentrated HClHCl; D, (R)-1-phenylethan-1-ol with concentrated HClHCl.

OHA: 1-ethylcyclohexan-1-ol+ conc. HBrOHB: pentan-1-ol+ conc. HBr, hotFOHC: 5-fluoro-2-methyl-pentan-2-ol + conc. HClOHD: (R)-1-phenylethan-1-ol+ conc. HCl
  • a) A: write the mechanism and count its steps. Why is it an SN1S_{N}1?
  • b) B: same task. Why does water not leave on its own here, and how many steps does the mechanism have?
  • c) C: a student replaces the fluorine with chlorine. Which group actually leaves, and why does the fluorine stay in place? Give the name of the product.
  • d) D: the carbocation formed is secondary, but it forms almost as easily as a tertiary one. Explain, naming the effect and counting the resonance forms that place the charge on the ring. What is the configuration of the product?
  • e) We want (S)-2-methylhexanenitrile from (R)-hexan-2-ol, without going through a carbocation. Propose two steps and give the configuration after each.
  • f) 3-Methylbutan-2-ol treated with concentrated HBrHBr gives mainly 2-bromo-2-methylbutane, not the expected 2-bromo-3-methylbutane. Explain using the mechanism.

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  • a) Protonation, loss of water, attack by Br−Br^{-}: SN1S_{N}1 in three steps, 1-bromo-1-ethylcyclohexane
  • b) Protonation then SN2S_{N}2: two steps, 1-bromopentane
  • c) Water leaves, fluorine stays: 4-chloro-1-fluoro-4-methylpentane
  • d) Benzylic cation stabilized by resonance, 3 forms with the charge on the ring; racemic product
  • e) TsClTsCl and pyridine: (R) tosylate; then NaCNNaCN in DMSO: (S)-2-methylhexanenitrile
  • f) 1,2-hydride shift: the secondary carbocation becomes tertiary, hence 2-bromo-2-methylbutane
a)

1) Protonation: a lone pair on the oxygen picks up the H+H^{+} from HBrHBr. This gives the oxonium ion R−OH2+R-OH_{2}^{+} and Br−Br^{-}.

2) Loss of water, the slow step: the C−OC-O bond breaks, water carries off the electron pair, and a planar tertiary carbocation remains.

3) The bromide attacks the carbocation: 1-bromo-1-ethylcyclohexane.

Three steps: one acid-base step, then the two steps of the SN1S_{N}1.

SN1S_{N}1 because the carbon is tertiary: backside attack is blocked by the three carbon groups, and those same groups stabilize the carbocation.

b)

1) Protonation, as for A.

2) The carbon is primary: a primary carbocation would be far too unstable to form on its own. Water therefore leaves only at the moment the bromide attacks from behind: SN2S_{N}2, in a single step.

Two steps in all. Product: 1-bromopentane. That is why heat is needed: the SN2S_{N}2 by a bromide, a moderate nucleophile, is slow.

c)

Only the OH group reacts: HClHCl protonates the oxygen, water leaves, and the tertiary carbocation is captured by Cl−Cl^{-}. SN1S_{N}1, as in a).

The fluorine does not leave: the C−FC-F bond, 485 kJ/mol, is the strongest of all the carbon-halogen bonds.

Product: (CH3)2CCl−CH2CH2CH2F(CH_{3})_{2}CCl-CH_{2}CH_{2}CH_{2}F.

Name: with the OH gone, nothing forces the numbering. All the substituents are prefixes, so we look for the lowest locants: {1,4,4}\{1, 4, 4\} starting from the fluorine, against {2,2,5}\{2, 2, 5\} from the other end. The product is 4-chloro-1-fluoro-4-methylpentane.

Pitfall: taking the halogen for the leaving group because it is a halogen. The leaving group is the one that leaves as a weak base: here, water.

d)

The 1-phenylethyl cation is secondary, but BENZYLIC: the positive carbon is bonded to the ring, and its empty orbital combines with the π\pi system. This is the resonance effect.

The charge is spread over the carbon outside the ring and over three carbons of the ring, the two ortho carbons and the para carbon: four resonance forms, of which three place the charge on the ring.

A charge spread over four atoms costs far less than a charge concentrated on one: a benzylic alcohol undergoes SN1S_{N}1 like a tertiary one.

Configuration: the carbocation is planar, and Cl−Cl^{-} attacks it on both faces. The starting (R) is lost: a racemic mixture of (R)- and (S)-(1-chloroethyl)benzene.

e)

Step 1: tosyl chloride TsClTsCl in pyridine. The oxygen of the alcohol attacks the sulfur: the C−OC-O bond is untouched, so the geometry is retained. The tosylate is (R): OTs>OTs> butyl >CH3>H>CH_{3}>H, as for the alcohol.

Step 2: sodium cyanide in DMSO. TsO−TsO^{-}, a very weak base, leaves like a bromide; CN−CN^{-} undergoes SN2S_{N}2, with inverted geometry.

CNCN, a carbon (N,N,N)(N,N,N), outranks butyl, a carbon (C,H,H)(C,H,H): it takes rank 1, so the letter changes. Product: (S)-2-methylhexanenitrile.

Why not HBrHBr then NaCNNaCN: on a secondary alcohol, protonation partly opens the SN1S_{N}1 route, and the configuration is partly lost. The tosylate gives a single, clean inversion.

f)

Protonation, then loss of water: a SECONDARY carbocation on carbon 2.

Its neighbour, carbon 3, is tertiary and carries an H. That hydrogen slides with its electron pair toward carbon 2: this is a 1,2-hydride shift. The carbocation becomes TERTIARY, on carbon 3.

The bromide attacks this new carbocation: 2-bromo-2-methylbutane.

Rule: as soon as a carbocation forms, in SN1S_{N}1 as in E1E1, look at its neighbours. An H or a methyl that can migrate toward a more stable carbocation does so. An SN2S_{N}2, with no carbocation, never rearranges.

OH+HBrOHH++Br−1) protonation: the OH group becomes H₂O, a good leaving groupOHH+slow++H₂O2) loss of water: planar tertiary carbocationBr−++Br3) bromide attacks: 1-bromo-1-ethylcyclohexane
A: the SN1 in three steps, arrow by arrow.
C₄H₉OH+HBrC₄H₉OHH++Br−1) protonationBr−C₄H₉OHH+one stepC₄H₉Br+H₂O2) bromide attacks opposite the leaving group while water leaves
B: protonation, then SN2 in one step, attack opposite the water.
++++four resonance forms: the charge is shared by the exocycliccarbon, the two ortho carbons and the para carbon
D: the four resonance forms of the 1-phenylethyl cation.
H+H⁻ shifts++Br−Brsecondarycarbocationtertiary carbocation,more stableThe H on carbon 3 slides with its pair toward C⁺:1,2-hydride shift.
f) The hydride shift: the secondary carbocation becomes tertiary before the bromide attacks.

Exercise 5: Dehydrating an alcohol: an E1 from which the acid emerges intact

Heated with concentrated phosphoric acid, a tertiary alcohol loses a molecule of water. The mechanism is an E1E1: protonation, loss of water, then loss of a neighbouring proton. The acid is not consumed: it is a catalyst.

The figure shows 3-methylpentan-3-ol, with its carbons numbered.

OH123453-methylpentan-3-ol+ conc. H₃PO₄, heat
  • a) Write the three steps of the mechanism. For each, say which species acts as the acid and which as the base.
  • b) How many different alkenes, stereoisomers included, can form? Name them.
  • c) Which one is major? State the rule and justify it by the substitution of the double bond.
  • d) Give the Z or E descriptor of each of the two stereoisomers, ranking the groups on each carbon of the double bond. Which one is expected in the larger amount?
  • e) A student writes the balanced equation: “alcohol + H3PO4H_{3}PO_{4} → alkene + H2OH_{2}O + H2PO4−H_{2}PO_{4}^{-}”. Correct it.

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  • a) Protonation by H3PO4H_{3}PO_{4}; loss of water; a base removes an H next to the carbocation
  • b) Three: (E)- and (Z)-3-methylpent-2-ene, 2-ethylbut-1-ene
  • c) Zaitsev: 3-methylpent-2-ene, trisubstituted
  • d) Methyl of C2C_{2} and ethyl of C3C_{3} on the same side: (Z); opposite: (E), in slight excess
  • e) C6H14O→C6H12+H2OC_{6}H_{14}O\rightarrow C_{6}H_{12}+H_{2}O, H3PO4H_{3}PO_{4} on the arrow
a)

1) Protonation: the acid H3PO4H_{3}PO_{4} gives up an H+H^{+}; a lone pair on the oxygen of the alcohol, the base, picks it up. This gives the oxonium ion and H2PO4−H_{2}PO_{4}^{-}.

2) Loss of water, the slow step: the C3−OC_{3}-O bond breaks, leaving a tertiary carbocation. Neither acid nor base in this step.

3) A base, water or H2PO4−H_{2}PO_{4}^{-}, removes a hydrogen carried by a carbon next to the carbocation; the electrons of the C−HC-H bond form the double bond. The carbocation plays the role of the acid here.

b)

Carbon 3 has three neighbours that carry hydrogens: C2C_{2}, C4C_{4} and the methyl.

C2C_{2} and C4C_{4} are equivalent, the molecule being symmetric: they give the same alkene, 3-methylpent-2-ene, which exists as (E) and (Z).

The methyl gives 2-ethylbut-1-ene.

Three alkenes in all.

c)

Zaitsev's rule: elimination gives mainly the most substituted alkene, which is the most stable.

3-Methylpent-2-ene carries three carbon groups on its double bond (trisubstituted); 2-ethylbut-1-ene carries only two (disubstituted).

Major: 3-methylpent-2-ene. Each additional alkyl group stabilizes the double bond.

d)

On C2C_{2}: CH3>HCH_{3}>H. On C3C_{3}: ethyl, a carbon (C,H,H)(C,H,H), >> methyl, a carbon (H,H,H)(H,H,H).

Methyl of C2C_{2} and ethyl of C3C_{3} on the same side: (Z); on opposite sides: (E).

Both are trisubstituted, and each keeps two groups facing each other: methyl against methyl in the (E), methyl against ethyl, slightly bulkier, in the (Z). The difference is small: both are obtained, and the steric argument predicts a slight excess of (E).

Pitfall: “trans” is not “E”. When a carbon carries two different carbon groups, only the priorities decide.

e)

The student's equation is not balanced in charge: H2PO4−H_{2}PO_{4}^{-} is left alone on the right, without the H+H^{+} it lost. That H+H^{+} went to water in step 3, then returns to H2PO4−H_{2}PO_{4}^{-}.

The acid is consumed in step 1 and RETURNED in step 3: it does not appear in the balanced equation.

C6H14O→C6H12+H2OC_{6}H_{14}O\rightarrow C_{6}H_{12}+H_{2}O, with H3PO4H_{3}PO_{4} written above the arrow.

OH+HOPO₃H₂OHH++H₂PO₄⁻1) protonation by the acidOHH+slowH++H₂O2) loss of water: tertiary carbocationH₂O+H++H₃O⁺3) a base, here water, removes an H next to the carbocationH₃O⁺ + H₂PO₄⁻ give back H₃PO₄ + H₂O: the acid is regenerated.
The E1 in three steps: protonation, loss of water, loss of a proton.
(E)-3-methylpent-2-enetrisubstituted(Z)-3-methylpent-2-enetrisubstituted2-ethylbut-1-enedisubstituted, minor
The three possible alkenes; the two trisubstituted ones dominate.

Part B: exam level (/50)

Exercise 6: The complete question: mechanism, all the products, stereodescriptors

Here is the typical exam question. (R)-2-chloropentane is reacted with concentrated sodium hydroxide at high temperature.

The figure shows the substrate as a wedge-and-dash structure, with its carbons numbered.

Cl12345(R)-2-chloropentane+ conc. NaOH, high temperature
  • a) Name the mechanism that leads to the major product and draw it. Which hydrogen does the base remove, and why not a hydrogen on carbon 1?
  • b) Draw all the minor products, of substitution and of elimination. How many different organic products can be obtained in all, the major one included?
  • c) Give the configuration of each product that has one: Z or E for the alkenes, R or S for the substitution product.
  • d) Sodium hydroxide is replaced by sodium cyanide in DMSO, at 25 °C. What product is obtained, with what configuration, and why does elimination become negligible?

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  • a) E2E2 through an H on carbon 3 (Zaitsev): (E)-pent-2-ene
  • b) (Z)-pent-2-ene, pent-1-ene, pentan-2-ol: four organic products in all
  • c) (E)- and (Z)-pent-2-ene; pent-1-ene with no stereoisomer; (S)-pentan-2-ol
  • d) SN2S_{N}2: (S)-2-methylpentanenitrile
a)

Secondary substrate, strong and concentrated base, high temperature: E2E2 elimination.

The base removes a hydrogen from carbon 3, placed anti to the chlorine. In one step, the C2=C3C_{2}=C_{3} double bond forms and Cl−Cl^{-} leaves.

Three arrows: from a lone pair on HO−HO^{-} to H; from the C3−HC_{3}-H bond to the C2−C3C_{2}-C_{3} bond; from the C2−ClC_{2}-Cl bond to Cl.

Why carbon 3: Zaitsev's rule. Its hydrogen gives pent-2-ene, disubstituted; a hydrogen on carbon 1 would give pent-1-ene, monosubstituted and less stable. With a small base such as HO−HO^{-}, the more stable alkene wins.

Of the two pent-2-enes, the conformation in which carbon 1 and carbon 4 are anti is the least crowded: it gives (E)-pent-2-ene, the major product.

b)

(Z)-pent-2-ene: E2E2 from the conformation in which carbons 1 and 4 are on the same side.

Pent-1-ene: E2E2 through a hydrogen on carbon 1, the Hofmann product.

Pentan-2-ol: SN2S_{N}2 of HO−HO^{-} at carbon 2.

Neither SN1S_{N}1 nor E1E1: with a strong, concentrated base on a secondary carbon, the carbocation has no time to form.

Four organic products in all. H2OH_{2}O, Na+Na^{+} and Cl−Cl^{-} are not counted among them.

Pitfall: forgetting the substitution product. The question says “substitution and elimination”: HO−HO^{-} is also a nucleophile.

c)

Pent-2-ene: on C2C_{2}, CH3>HCH_{3}>H; on C3C_{3}, ethyl >H>H. Priority groups on opposite sides: (E); on the same side: (Z).

Pent-1-ene: C1C_{1} carries two H, so there is no stereoisomerism.

Pentan-2-ol: the SN2S_{N}2 inverts the geometry. Before, Cl>Cl> propyl >CH3>H>CH_{3}>H; after, OH>OH> propyl >CH3>H>CH_{3}>H. The entering group takes the rank of the leaving group: the letter changes, (R) becomes (S). Product: (S)-pentan-2-ol.

d)

CN−CN^{-} is a very good nucleophile but a weak base (pKapK_{a} of HCNHCN: 9.2); aprotic DMSO makes it more nucleophilic still; 25 °C does not favour elimination.

SN2S_{N}2 almost alone: 2-methylpentanenitrile.

Priorities: CNCN, a carbon (N,N,N)(N,N,N), >> propyl, a carbon (C,H,H)(C,H,H), >CH3>H>CH_{3}>H. The entering group again takes rank 1: geometry and letter both invert, (R) becomes (S).

Product: (S)-2-methylpentanenitrile.

ClHHO⁻heat+H₂O + Cl⁻H (carbon 3) and Cl (carbon 2) anti, on opposite sides of the plane:three arrows, one step, (E)-pent-2-ene
The mechanism of the major product: E2, three arrows, H and Cl anti.
(E)-pent-2-enemajor, E2(Z)-pent-2-eneE2pent-1-eneE2, HofmannOH(S)-pentan-2-olSN2, inversion
The four organic products, the major one in green.

Exercise 7: Choosing the reagent: the product you want, not the one you fear

On an exam, one question in four gives the product and asks for the reagent. We reason backwards: which bond has formed, which mechanism formed it, and which reagent makes that mechanism faster than its competitors?

The figure shows four transformations, the reagent left blank:a)(2-chloroethyl)cyclohexane to (2-ethoxyethyl)cyclohexaneb)(1-bromopropyl)benzene to (1-methoxypropyl)benzenec)2-bromo-4-methylpentane to 4-methylpent-1-ened)(2-bromoethyl)benzene to styrene.

a)Clreagent?Ob)Brreagent?OCH₃c)Brreagent?d)Brreagent?
  • a) Choose the reagent for a) from ethanol, sodium ethoxide, potassium tert-butoxide and sodium hydroxide. Say what each of the other three would give.
  • b) For b), should it be methanol or sodium methoxide? Justify using the mechanism, and say what the other reagent costs you.
  • c) For c), which reagent should be chosen? What product would sodium ethoxide give instead?
  • d) For d), a student used sodium hydroxide in water at 25 °C and obtained mostly an alcohol. Propose two effective changes so that styrene becomes the main product.
  • e) Place each of these five reagents in its family: potassium tert-butoxide, sodium iodide, sodium methoxide, water, sodium cyanide. Families: strong base and good nucleophile; strong, bulky base; good nucleophile that is only weakly basic; weak nucleophile and weak base.
  • f) 5-Bromopentan-1-ol, treated with sodium hydride NaHNaH, gives a compound C5H10OC_{5}H_{10}O that no longer contains bromine. Which compound, and by what steps?

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  • a) Sodium ethoxide (SN2S_{N}2, Williamson)
  • b) Methanol (SN1S_{N}1); methoxide would lose substrate to a conjugated alkene by E2E2
  • c) Potassium tert-butoxide (Hofmann); ethoxide would give 4-methylpent-2-ene
  • d) Bulky base (tert-butoxide) and heat
  • e) Bulky: tert-butoxide; strong and nucleophilic: methoxide; good nucleophiles, weakly basic: iodide and cyanide; weak: water
  • f) Deprotonation by NaHNaH, then intramolecular SN2S_{N}2: oxane, six-membered ring
a)

Bond formed: C−OC-O, on a primary carbon. An SN2S_{N}2 is needed, hence a strong nucleophile: sodium ethoxide CH3CH2O−Na+CH_{3}CH_{2}O^{-}Na^{+}. This is the Williamson synthesis.

Ethanol alone: too weak a nucleophile for a primary carbon, a very slow reaction.

Sodium hydroxide: it would give 2-cyclohexylethan-1-ol, not the ether.

The tert-butoxide: a strong, bulky base, it would mainly do the E2E2 and give vinylcyclohexane.

b)

Bond formed: C−OC-O, on a secondary and BENZYLIC carbon.

Methoxide, a strong base, opens the E2E2 route, all the more easily because the alkene formed, (E)-1-phenylprop-1-ene, is conjugated with the ring: a good part of the substrate is lost as alkene.

Methanol, weak and neutral, lets the bromide leave: the benzylic cation, stabilized by resonance as in exercise 4, is captured by the solvent. SN1S_{N}1, then loss of an H+H^{+}.

Reagent: methanol, which also serves as the solvent. Racemic product, with HBrHBr released.

c)

The desired alkene is the LESS substituted one: this is the Hofmann product. A strong, bulky base is needed, potassium tert-butoxide (CH3)3CO−K+(CH_{3})_{3}CO^{-}K^{+}. Too large to reach the hydrogen on carbon 3, it removes one from the methyl, the most accessible.

Ethoxide, a small base, would follow Zaitsev: 4-methylpent-2-ene, mostly (E).

Another way round: start from 1-bromo-4-methylpentane, which can give only one alkene, and treat it with tert-butoxide.

Pitfall: “strong base” is not enough. Small, it gives Zaitsev; bulky, it gives Hofmann.

d)

At 25 °C in water, HO−HO^{-} attacks the primary carbon: the SN2S_{N}2 gives mainly 2-phenylethan-1-ol.

First change: replace the sodium hydroxide with a strong, bulky base, potassium tert-butoxide in tert-butanol. It can hardly undergo SN2S_{N}2 any more.

Second change: heat. Elimination makes three species from two; its reaction entropy is more favourable, and the −TΔS-T\Delta S term favours it all the more as the temperature rises.

Styrene forms all the better because its double bond is conjugated with the ring.

e)

Methoxide: strong base, small, hence also a good nucleophile. SN2S_{N}2 on a primary carbon, E2E2 on a secondary or tertiary one.

tert-Butoxide: an equally strong base, but its three methyls keep it from approaching a carbon. Bulky base: Hofmann E2E2.

Iodide and cyanide: weak bases (pKapK_{a} of HIHI: −10-10; of HCNHCN: 9.2), good nucleophiles: SN2S_{N}2.

Water: weak in every respect, it waits for the carbocation. SN1S_{N}1 or E1E1, and only on a tertiary, benzylic or allylic carbon.

Pitfall: nucleophilicity and basicity are not the same thing. Basicity is an equilibrium with H+H^{+}; nucleophilicity is a rate of attack on a carbon.

f)

Step 1, acid-base: NaHNaH, a very strong base, removes the H of the OH group. An alkoxide forms, and dihydrogen is evolved.

Step 2, INTRAMOLECULAR SN2S_{N}2: the charged oxygen attacks carbon 5, primary, which carries the bromine, at the other end of its own chain. A six-membered ring, five carbons and one oxygen, closes.

Product: oxane, or tetrahydropyran, C5H10OC_{5}H_{10}O, with NaBrNaBr.

A five- or six-membered ring closes quickly, because the two ends of the chain often meet: this is the Williamson synthesis inside a single molecule.

O⁻BrSN2O+ Br⁻the alkoxide formed by NaH attacks carbon 5 of its own chain:a six-membered ring closes, oxane
f) The intramolecular SN2: the alkoxide attacks carbon 5 of its own chain.

Exercise 8: Five statements to correct

Each statement is to be declared true or false. If it is false, the expected correction is the correct sentence, not just the changed word. All of them repeat mistakes found on exam papers.

  • a) “1-Fluorohexane reacts with sodium hydroxide like 1-chlorohexane, since fluorine is the most electronegative of the halogens.”
  • b) “3-Bromohexane treated with hot sodium methoxide reacts by E1E1, because it is secondary.”
  • c) “In the balanced equation of a substitution by CH3O−Na+CH_{3}O^{-}Na^{+} on an alkyl chloride, the products written are the ether, CH3O−CH_{3}O^{-} and NaCl+NaCl^{+}.”
  • d) “An amine mixed with HClHCl does not react, since it has no good leaving group.”
  • e) “The SN1S_{N}1 of 2-chloro-2-methylbutane with ethanethiol CH3CH2SHCH_{3}CH_{2}SH stops at a charged sulfonium ion, since the thiol is neutral.”

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  • a) False: fluorine does not leave, no reaction
  • b) False: strong base, hence E2E2
  • c) False: ROCH3+Na++Cl−ROCH_{3}+Na^{+}+Cl^{-}
  • d) False: acid-base reaction, alkylammonium chloride
  • e) False: final deprotonation, neutral thioether and HClHCl
a)

FALSE. The polarity of the bond does not decide: it is the DEPARTURE that counts.

The C−FC-F bond, 485 kJ/mol, is the strongest of the carbon-halogen bonds: fluorine does not leave.

Correct sentence: 1-fluorohexane hardly reacts at all with sodium hydroxide; 1-chlorohexane undergoes SN2S_{N}2 and gives hexan-1-ol.

b)

FALSE. The class of the carbon does not choose alone between E1E1 and E2E2: it is the BASE.

Methoxide is a strong base: it removes a hydrogen before the carbocation, secondary and not very stable, has had time to form.

Correct sentence: a secondary halide and a strong base when hot react by E2E2, with a little SN2S_{N}2; the E1E1 requires a weak base and a stable carbocation.

c)

FALSE, twice. Methoxide is consumed: it is in the ether. And sodium chloride is neutral: Na+Na^{+}, a spectator, and Cl−Cl^{-}, the leaving group.

Correct sentence: RCl+CH3O−+Na+→ROCH3+Na++Cl−RCl+CH_{3}O^{-}+Na^{+}\rightarrow ROCH_{3}+Na^{+}+Cl^{-}, total charge zero on each side.

d)

FALSE. Before looking for a leaving group, look for an acid-base reaction: an amine is a base, HClHCl a strong acid.

Correct sentence: the amine is protonated instantly; an alkylammonium chloride RNH3+ Cl−RNH_{3}^{+}\,Cl^{-} is obtained.

e)

FALSE. The thiol attacks the carbocation and does form a sulfonium ion, but a third step follows: a base in the medium removes its H+H^{+}.

Correct sentence: with a neutral nucleophile, the SN1S_{N}1 ends with a deprotonation. Products: 2-(ethylsulfanyl)-2-methylbutane and HClHCl, both neutral.

Exercise 9: Problem: the SN2 of living things, from noradrenaline to adrenaline

In the adrenal medulla, an enzyme, phenylethanolamine N-methyltransferase, converts noradrenaline (norepinephrine) into adrenaline (epinephrine), the stress hormone. It invents no new chemistry: it catalyzes a second-order nucleophilic substitution.

The methyl donor is S-adenosylmethionine, written SAM: a sulfonium ion, that is, a sulfur carrying three carbon groups and a positive charge. One of these groups is a methyl. After the reaction, S-adenosylhomocysteine remains, a neutral thioether.

The figure shows (R)-noradrenaline and the reactive part of SAM, the other two groups on the sulfur being written R¹ and R².

HOHOOHNH₂H₃CSR¹R²+(R)-noradrenalineSAM, reactive part
  • a) Identify the nucleophile, the carbon attacked and the leaving group. Why is this leaving group excellent, although it contains no halogen?
  • b) Why can the reaction only be an SN2S_{N}2, never an SN1S_{N}1?
  • c) Draw the mechanism. How many steps are needed to reach neutral adrenaline, and what happens in the last one?
  • d) Rank the four groups on the asymmetric carbon of noradrenaline, then give the configuration of the adrenaline formed. Did the reaction touch this carbon?
  • e) In the laboratory, noradrenaline could be methylated with iodomethane. Why would a mixture be obtained? And why can the cell not use methanol as a methyl donor?

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  • a) Nucleophile: lone pair on N; carbon of the methyl; leaving group: neutral thioether, a very weak base
  • b) A methyl cation does not form; the methyl is ideal for backside attack
  • c) SN2S_{N}2 then deprotonation of the ammonium: two steps
  • d) OH>CH2N>OH>CH_{2}N> ring >H>H; (R)-adrenaline, carbon 1 intact
  • e) Polymethylation with CH3ICH_{3}I; HO−HO^{-} does not leave, methanol cannot give up its methyl
a)

Nucleophile: the lone pair on the nitrogen of the NH2NH_{2} group.

Carbon attacked: that of the methyl bonded to sulfur, made electrophilic by the neighbouring positive charge.

Leaving group: S-adenosylhomocysteine, a NEUTRAL thioether R1−S−R2R^{1}-S-R^{2}.

As it leaves, the sulfur takes the electron pair of the S−CH3S-CH_{3} bond and loses its charge: it leaves uncharged, as a very weak base. This is exactly what is asked of a leaving group; the halogen is only a special case.

b)

The carbon attacked is a METHYL. The CH3+CH_{3}^{+} cation would be the least stable of all: no alkyl group stabilizes it, and it never forms in solution.

On the other hand, a methyl is the least crowded carbon there is: backside attack is ideal. SN2S_{N}2, and nothing else.

c)

Step 1, SN2S_{N}2, two arrows: from the lone pair on the nitrogen to the methyl carbon; from the C−SC-S bond to the sulfur.

The nitrogen now has four bonds and a positive charge: it is an ammonium ion R−NH2+−CH3R-NH_{2}^{+}-CH_{3}.

Step 2, acid-base: a base in the medium removes an H+H^{+} from this nitrogen, which regains its lone pair. Neutral adrenaline is obtained. Two steps.

In blood, at pH 7.4, the protonated form actually dominates, as for all amines of this kind.

d)

Carbon 1, the one bearing OH: OH>CH2NH2>OH>CH_{2}NH_{2}> ring >H>H.

CH2NH2CH_{2}NH_{2}, a carbon (N,H,H)(N,H,H), beats the ring, a carbon (C,C,C)(C,C,C), at the first point of difference: N against C, even though the ring lines up three carbons.

In adrenaline, CH2NHCH3CH_{2}NHCH_{3} is still a carbon (N,H,H)(N,H,H): the priorities do not change.

The reaction took place on the nitrogen, two bonds away: no bond of carbon 1 was broken, its geometry is intact. The adrenaline formed is (R), the natural enantiomer.

e)

Iodomethane: the primary amine reacts, but the secondary amine formed is still nucleophilic, even slightly more so. It is methylated in turn, then the tertiary amine, all the way to the quaternary ammonium ion: a mixture is obtained. The enzyme places a single substrate facing a single methyl.

Methanol: HO−HO^{-} would have to be expelled, a strong base (pKapK_{a} of water: 15.7), which is impossible, as for hexan-1-ol in exercise 1.

The cell therefore ACTIVATES the methyl by attaching it to a positive sulfur; it spends a molecule of ATP to do so, which turns methionine into SAM.

HOHOOHNH₂H₃CSR¹R²+1) SN2 at the methyl: nitrogen attacks, the thioether leavesHOHOOHNH+R¹−S−R²+H⁺2) a base removes H⁺ from the ammonium ion formed:(R)-adrenaline, carbon 1 untouched

Exercise 10: Problem: preparing cyclohexene in the laboratory, two routes

Cyclohexene, a liquid that boils at 83 °C, is prepared in the laboratory in two ways. Route 1: 10.0 g of cyclohexanol is heated with 85% phosphoric acid, and the cyclohexene is distilled off as it forms; 6.15 g of dry cyclohexene is collected. Route 2: 16.3 g of bromocyclohexane is heated at reflux with excess sodium ethoxide in ethanol; all the bromocyclohexane reacts, and analysis of the crude product gives 85% cyclohexene and 15% ethoxycyclohexane, in amount of substance.

Molar masses, in g/mol: cyclohexanol 100.16; bromocyclohexane 163.06; cyclohexene 82.14; ethoxycyclohexane 128.21. Boiling points: cyclohexene 83 °C; cyclohexanol 161 °C. The figure summarizes the two routes.

route 1OHcyclohexanol10.0 g85% H₃PO₄heat,distillationcyclohexene+H₂Oroute 2Brbromocyclohexane16.3 gCH₃CH₂ONaethanol,refluxcyclohexene+Oethoxycyclohexane
  • a) Route 1: name the mechanism and describe its three steps. Why can only one alkene form?
  • b) Calculate the yield of route 1.
  • c) Why distill the cyclohexene as it forms? Give two reasons, one about the equilibrium and one about the separation.
  • d) Route 2: name the two competing mechanisms, then calculate the masses of cyclohexene and ethoxycyclohexane formed.
  • e) Propose a modification of route 2 that cuts down the ether by-product, then say, in one sentence, which route you would choose for a CEGEP laboratory.

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  • a) E1E1: protonation, loss of water, loss of a proton; a single alkene by symmetry
  • b) 75.0%
  • c) Shift the equilibrium; separate the alkene (83 °C) from the cyclohexanol (161 °C)
  • d) E2E2 and SN2S_{N}2: 6.98 g of cyclohexene and 1.92 g of ethoxycyclohexane
  • e) Potassium tert-butoxide; route 1 at the CEGEP
a)

Secondary alcohol, concentrated acid, heat: E1E1.

1) H3PO4H_{3}PO_{4} protonates the oxygen: oxonium ion.

2) Water leaves, the slow step: secondary carbocation.

3) Water or H2PO4−H_{2}PO_{4}^{-} removes a neighbouring hydrogen, the double bond forms, the acid is returned.

Only one alkene: the two carbons next to the carbocation are equivalent by the symmetry of the ring, and give the same cyclohexene. Zaitsev's rule has nothing to decide.

b)

n=10.0100.16=0.09984n=\frac{10.0}{100.16}=0.09984 mol of cyclohexanol, hence at most as much cyclohexene.

mth=0.09984×82.14=8.20m_{th}=0.09984\times 82.14=8.20 g

η=6.158.20=0.750\displaystyle \eta=\frac{6.15}{8.20}=0.750

Yield: 75.0%.

c)

Equilibrium: dehydration is reversible, acid hydration of the alkene being the reverse reaction. Removing the cyclohexene from the flask shifts the equilibrium toward its formation (Le Chatelier's principle).

Separation: cyclohexene boils at 83 °C, cyclohexanol at 161 °C. Only the alkene, with a little water, distils over: it separates from the reactant as it forms.

d)

Strong base and strong nucleophile on a secondary substrate, hot: E2E2 major, SN2S_{N}2 minor.

n=16.3163.06=0.09996n=\frac{16.3}{163.06}=0.09996 mol

Cyclohexene: 0.85×0.09996×82.14=6.980.85\times 0.09996\times 82.14=6.98 g

Ethoxycyclohexane: 0.15×0.09996×128.21=1.920.15\times 0.09996\times 128.21=1.92 g

Pitfall: the percentages refer to amounts of substance; apply them to the moles, then convert each product with ITS own molar mass.

e)

Replace ethoxide with potassium tert-butoxide: a strong, bulky base, it hardly undergoes SN2S_{N}2 any more, and the ether recedes.

For a CEGEP laboratory, route 1: inexpensive reagents, no strong base sensitive to moisture, only one possible alkene, and a product separated by the distillation itself. Phosphoric acid is preferred to sulfuric acid, which oxidizes and chars part of the alcohol.

OH+HOPO₃H₂OHH++H₂PO₄⁻1) protonation by the acidOHH+slowH++H₂O2) loss of water: secondary carbocationH₂O+H++H₃O⁺3) water removes a neighbouring H: cyclohexene; H₃O⁺ and H₂PO₄⁻ give back the acid
Route 1: the E1 of cyclohexanol in three steps.
BrHO⁻heat+ CH₃CH₂OH+ Br⁻E2: three arrows, one step;H and Br anti, on opposite sides of the ring
Route 2: the major E2, three arrows, H and Br anti.

Part C: practice (/10)

Exercise 11: Practice: twelve reactions to complete

Instructions: for each reaction, name the reaction that takes place, SN1S_{N}1, SN2S_{N}2, E1E1, E2E2, acid-base only or no reaction, and give the major organic product.

  • a) Reaction 1: 1-bromo-3-methylbutane and sodium iodide in propanone. Reaction 2: 2-bromo-2-methylpentane in warm water.
  • b) Reaction 3: 2-bromo-2-methylpentane and concentrated potassium hydroxide in ethanol, heated. Reaction 4: chlorocyclopentane and sodium azide NaN3NaN_{3} in DMSO.
  • c) Reaction 5: cyclopentanol and concentrated sulfuric acid, heated. Reaction 6: 2-methylpentan-2-ol and concentrated HBrHBr, cold.
  • d) Reaction 7: heptan-1-ol and concentrated HBrHBr, heated. Reaction 8: 1-iodopropane and sodium ethanoate CH3COONaCH_{3}COONa in dimethylformamide.
  • e) Reaction 9: 2-bromo-2,3-dimethylbutane and potassium tert-butoxide, heated. Reaction 10: propanoic acid and sodium hydroxide.
  • f) Reaction 11: 1-fluoropentane and sodium cyanide in DMSO. Reaction 12: 1-propoxypropane and sodium bromide.

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  • a) 1: SN2S_{N}2, 1-iodo-3-methylbutane; 2: SN1S_{N}1, 2-methylpentan-2-ol
  • b) 3: E2E2, 2-methylpent-2-ene; 4: SN2S_{N}2, azidocyclopentane
  • c) 5: E1E1, cyclopentene; 6: SN1S_{N}1, 2-bromo-2-methylpentane
  • d) 7: SN2S_{N}2, 1-bromoheptane; 8: SN2S_{N}2, propyl ethanoate
  • e) 9: E2E2, 2,3-dimethylbut-1-ene (Hofmann); 10: acid-base, sodium propanoate
  • f) 11 and 12: no reaction

Method: the four questions of exercise 1, in order, for each reaction: leaving group, reagent, class of the carbon, acid-base.

a)

Reaction 1: primary bromide, I−I^{-} an excellent nucleophile, aprotic propanone: SN2S_{N}2. Product: 1-iodo-3-methylbutane. Sodium bromide, insoluble in propanone, precipitates.

Reaction 2: tertiary bromide, weak and neutral water: SN1S_{N}1, then deprotonation. Product: 2-methylpentan-2-ol, with a little alkene by E1E1.

b)

Reaction 3: same substrate, strong concentrated base, heat: E2E2. Product: 2-methylpent-2-ene, trisubstituted (Zaitsev), ahead of 2-methylpent-1-ene.

Reaction 4: secondary chloride, N3−N_{3}^{-} a good nucleophile and weak base, DMSO: SN2S_{N}2. Product: azidocyclopentane.

Pitfall: reactions 2 and 3 start from the same bromide. Only the reagent changes, and it changes everything.

c)

Reaction 5: secondary alcohol, concentrated acid, heat: protonation, loss of water, loss of a proton. E1E1: cyclopentene, the only possible alkene by symmetry.

Reaction 6: tertiary alcohol, hydrohalic acid, cold: protonation, loss of water, attack by Br−Br^{-}. SN1S_{N}1: 2-bromo-2-methylpentane.

d)

Reaction 7: primary alcohol protonated by HBrHBr: the bromide attacks while the water leaves. SN2S_{N}2: 1-bromoheptane.

Reaction 8: primary iodide, ethanoate ion a nucleophile and weak base, aprotic solvent: SN2S_{N}2. Product: propyl ethanoate, an ester.

e)

Reaction 9: tertiary bromide, strong and BULKY base: E2E2 toward the most accessible hydrogen, that of a methyl. Hofmann product: 2,3-dimethylbut-1-ene, not the Zaitsev 2,3-dimethylbut-2-ene.

Reaction 10: a carboxylic acid and a strong base: acid-base only. Product: sodium propanoate CH3CH2COO−Na+CH_{3}CH_{2}COO^{-}Na^{+}, no group is substituted.

f)

Reaction 11: F−F^{-} does not leave, the C−FC-F bond is the strongest of the carbon-halogen bonds: no reaction.

Reaction 12: a propoxide ion, a strong base, would have to be expelled, and Br−Br^{-} is not an acid able to protonate the oxygen: no reaction. With concentrated, hot HBrHBr, the ether would be cleaved.

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